Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68360 101 / 3e-26 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G67030 100 / 3e-26 C2H2ZnF ZFP6 zinc finger protein 6 (.1) AT3G58070 60 / 7e-11 C2H2ZnF GIS GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G25160 59 / 1e-10 C2H2ZnF ZFP3 zinc finger protein 3 (.1) AT1G10480 59 / 1e-10 C2H2ZnF ZFP5 zinc finger protein 5 (.1) AT2G41940 59 / 3e-10 C2H2ZnF ZFP8 zinc finger protein 8 (.1) AT5G10970 58 / 4e-10 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G06650 57 / 4e-10 C2H2ZnF GIS2 GLABROUS INFLORESCENCE STEMS 2, C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G80730 57 / 6e-10 C2H2ZnF ATZFP1, ZFP1 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) AT1G66140 56 / 3e-09 C2H2ZnF ZFP4 zinc finger protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G116300 [exp] 296 / 2e-102 AT1G68360 99 / 6e-25 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.010G122400 [exp] 117 / 3e-32 AT1G68360 149 / 2e-44 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.008G123100 [exp] 109 / 2e-29 AT1G68360 123 / 4e-34 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.016G060600 [exp] 77 / 4e-17 AT2G41940 155 / 1e-46 zinc finger protein 8 (.1) Potri.006G195100 [exp] 76 / 7e-17 AT3G58070 156 / 4e-47 GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.002G199200 [exp] 68 / 4e-14 AT1G67030 71 / 2e-15 zinc finger protein 6 (.1) Potri.010G140700 [exp] 65 / 6e-13 AT5G14010 66 / 9e-14 KNUCKLES, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.001G324600 [exp] 65 / 8e-13 AT5G14010 75 / 5e-17 KNUCKLES, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.008G193400 [exp] 62 / 2e-11 AT1G10480 69 / 9e-14 zinc finger protein 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033567 [exp] 103 / 2e-27 AT1G67030 113 / 2e-31 zinc finger protein 6 (.1) Lus10017609 [exp] 100 / 5e-26 AT1G67030 113 / 2e-31 zinc finger protein 6 (.1) Lus10029204 [exp] 74 / 4e-16 AT1G68360 71 / 2e-14 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10018328 [exp] 65 / 7e-13 AT5G10970 94 / 6e-24 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10017125 [exp] 65 / 8e-13 AT5G10970 95 / 4e-24 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10016238 [exp] 65 / 9e-13 AT3G58070 118 / 1e-32 GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10021081 [exp] 61 / 4e-11 AT3G58070 147 / 3e-43 GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10017229 [exp] 59 / 8e-11 AT3G58070 120 / 5e-34 GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10026121 [exp] 56 / 4e-09 AT5G10970 85 / 1e-18 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10014350 [exp] 55 / 4e-09 AT1G80730 110 / 1e-29 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G097900.1 pacid=42795257 polypeptide=Potri.004G097900.1.p locus=Potri.004G097900 ID=Potri.004G097900.1.v4.1 annot-version=v4.1 ATGGATTTTGGTTGTCATGCAAAATCTAATACCATCTCCAGCAACAACACAACCCTAAAACTCTTCGGCTTCGACATTTCGGAGAACAACAACCCTACAG TGCCTTTAGATTCAAGTAAATCTCCATCTGGGTCACAGGAATCAGAGACTAATTTCCAATCTTCCGAAGGTAGAAAATATGAGTGTCAATACTGTTGTCG TGAGTTTGCGAACTCTCAAGCCTTGGGTGGTCACCAAAACGCTCACAAGAAAGAAAGACGGCTTTTGAAACGTGCTCAAATGCAAGCCACCCGCAGCTTG GCTGCAGCTTCATATGTTACCATACCAAATTCTATGTTCTCAACGTTTTCACCACCGCCACCTCACCTCCTTGATCCAGCGGTGGTTCCGATGGCGGCGG CGATGCAAGAACATGCCCATTCCTCTCCCTGGTTTTACACGTCCTATTCGGGACGCATGCCGCGTGGCGGCCCGTATCTTAATGGGCCTGCTTCTTTTCA CGGAAGGTGTCTGGACGGAAAGAGTTTGGTTGGCAGTGAGGTTGGGCTTCATTCTAAAGTTTTTCCGATGAGTGGATTCACTAGAGAAGATGTTGACCAT CATAAGGGATTAGGTTTGGATTTGCATCTATAG
AA sequence Show only first row Show all	>Potri.004G097900.1 pacid=42795257 polypeptide=Potri.004G097900.1.p locus=Potri.004G097900 ID=Potri.004G097900.1.v4.1 annot-version=v4.1 MDFGCHAKSNTISSNNTTLKLFGFDISENNNPTVPLDSSKSPSGSQESETNFQSSEGRKYECQYCCREFANSQALGGHQNAHKKERRLLKRAQMQATRSL AAASYVTIPNSMFSTFSPPPPHLLDPAVVPMAAAMQEHAHSSPWFYTSYSGRMPRGGPYLNGPASFHGRCLDGKSLVGSEVGLHSKVFPMSGFTREDVDH HKGLGLDLHL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67030	C2H2ZnF	ZFP6	zinc finger protein 6 (.1)		Potri.004G097900 [exp]	0	1
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Potri.014G070800 [exp]	8.66	0.9289
AT3G03530		NPC4	non-specific phospholipase C4 ...		Potri.013G073600 [exp]	11.31	0.9100
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Potri.002G263800 [exp]	13.56	0.8559
AT3G18180			Glycosyltransferase family 61 ...		Potri.015G042200 [exp]	17.20	0.9111
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.006G170300 [exp]	17.43	0.8784
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.006G123400 [exp]	19.28	0.9106
AT2G38300	GARP		myb-like HTH transcriptional r...		Potri.009G075100 [exp]	24.73	0.9069
AT4G17800	AT-hook		Predicted AT-hook DNA-binding ...		Potri.003G091300 [exp]	29.83	0.9097
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Potri.006G247700 [exp]	30.59	0.8993	Pt-WGA3.1
AT3G18170			Glycosyltransferase family 61 ...		Potri.015G042300 [exp]	31.78	0.8952

Compare expression of checked genes

Potri.004G097900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.