Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36470 100 / 2e-25 Plant protein of unknown function (DUF868) (.1) AT2G27770 94 / 2e-23 Plant protein of unknown function (DUF868) (.1) AT5G28150 68 / 6e-14 Plant protein of unknown function (DUF868) (.1) AT3G04860 67 / 1e-13 Plant protein of unknown function (DUF868) (.1) AT5G11000 54 / 6e-09 Plant protein of unknown function (DUF868) (.1) AT5G48270 51 / 5e-08 Plant protein of unknown function (DUF868) (.1) AT4G12690 46 / 4e-06 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) AT3G13229 42 / 5e-05 Plant protein of unknown function (DUF868) (.1) AT2G04220 41 / 0.0002 Plant protein of unknown function (DUF868) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G116200 [exp] 222 / 4e-73 AT2G27770 249 / 2e-81 Plant protein of unknown function (DUF868) (.1) Potri.004G187600 [exp] 125 / 2e-35 AT2G27770 305 / 2e-103 Plant protein of unknown function (DUF868) (.1) Potri.009G148300 [exp] 122 / 3e-34 AT2G27770 308 / 7e-105 Plant protein of unknown function (DUF868) (.1) Potri.013G038000 [exp] 84 / 1e-19 AT5G28150 409 / 6e-145 Plant protein of unknown function (DUF868) (.1) Potri.005G050900 [exp] 84 / 1e-19 AT5G28150 417 / 2e-148 Plant protein of unknown function (DUF868) (.1) Potri.005G210800 [exp] 69 / 3e-14 AT5G28150 359 / 2e-125 Plant protein of unknown function (DUF868) (.1) Potri.002G051600 [exp] 64 / 3e-12 AT5G28150 364 / 2e-127 Plant protein of unknown function (DUF868) (.1) Potri.006G261300 [exp] 54 / 1e-08 AT5G11000 295 / 3e-97 Plant protein of unknown function (DUF868) (.1) Potri.015G084500 [exp] 46 / 5e-06 AT4G12690 254 / 1e-83 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014372 [exp] 107 / 2e-28 AT2G27770 201 / 8e-63 Plant protein of unknown function (DUF868) (.1) Lus10023869 [exp] 106 / 4e-28 AT2G27770 196 / 1e-60 Plant protein of unknown function (DUF868) (.1) Lus10009405 [exp] 77 / 6e-17 AT2G27770 234 / 5e-75 Plant protein of unknown function (DUF868) (.1) Lus10001787 [exp] 71 / 8e-15 AT5G28150 357 / 2e-124 Plant protein of unknown function (DUF868) (.1) Lus10020240 [exp] 66 / 5e-13 AT5G28150 356 / 2e-124 Plant protein of unknown function (DUF868) (.1) Lus10022050 [exp] 57 / 5e-10 AT5G28150 310 / 2e-105 Plant protein of unknown function (DUF868) (.1) Lus10042600 [exp] 55 / 3e-09 AT5G28150 310 / 3e-105 Plant protein of unknown function (DUF868) (.1) Lus10017128 [exp] 49 / 4e-07 AT5G11000 245 / 1e-78 Plant protein of unknown function (DUF868) (.1) Lus10039183 [exp] 42 / 9e-05 AT2G04220 351 / 2e-121 Plant protein of unknown function (DUF868) (.1) Lus10027127 [exp] 42 / 0.0001 AT2G04220 263 / 4e-87 Plant protein of unknown function (DUF868) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05910 [poplar] [flax] DUF868 Plant protein of unknown function (DUF868)
Representative CDS sequence Show only first row Show all	>Potri.004G098000.2 pacid=42795680 polypeptide=Potri.004G098000.2.p locus=Potri.004G098000 ID=Potri.004G098000.2.v4.1 annot-version=v4.1 ATGAGGAGTATAGGAACTTGTTACAGCGAACATGCCATCAAAGTATCTGATTCGTATTGCTCAGGCCCTTCAAACCATGCCTACCTCTCCCCAAACTTTA CCCCTTCGATCCAAGATACAGTTTCCTGTATATACAAAGTGAAACTCTCCACTCAAAAGCACCTCTTGATCACCCTCACTTGGTGGAACAAATTGATATT CGAAGGCCTTAACATAAATATTGATGACAGCATTTCCTCTTCTTCAAGAAACAGTGCTGGTTCCGTCCACCAGCTTCAAGAAATTAAAGGCACCAGCACA TTTCAATCTTGTAATTCAAAGATTGAAATCTTTTGGGGTGTTTCTGCTGCTTGTTTGGATGCAGGACCTGAGCCCATCAGAGGGTTTTACGTTGTTGTTT TGGTGGACTCAGAATTGGGTCTAGTCCTTGGAGATATTGATAATGAAGAAATCAGCACAAAATGTTTGAAGAAAAAATCAGCACCATTGAGACAGACCCT CATTGGCTTCTCGAAGTGA
AA sequence Show only first row Show all	>Potri.004G098000.2 pacid=42795680 polypeptide=Potri.004G098000.2.p locus=Potri.004G098000 ID=Potri.004G098000.2.v4.1 annot-version=v4.1 MRSIGTCYSEHAIKVSDSYCSGPSNHAYLSPNFTPSIQDTVSCIYKVKLSTQKHLLITLTWWNKLIFEGLNINIDDSISSSSRNSAGSVHQLQEIKGTST FQSCNSKIEIFWGVSAACLDAGPEPIRGFYVVVLVDSELGLVLGDIDNEEISTKCLKKKSAPLRQTLIGFSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36470			Plant protein of unknown funct...		Potri.004G098000 [exp]	0	1
AT2G47260	WRKY	ATWRKY23, WRKY2...	WRKY DNA-binding protein 23 (....		Potri.014G118200 [exp]	4.47	0.8773
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.018G023800 [exp]	5.47	0.8631
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Potri.002G208444 [exp]	13.19	0.8711
AT5G19670			Exostosin family protein (.1)		Potri.006G238900 [exp]	19.79	0.8225
AT4G39620		ATPPR5, EMB2453	EMBRYO DEFECTIVE 2453, A. THAL...		Potri.007G084750 [exp]	23.36	0.8407
AT5G10970	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.018G021400 [exp]	23.74	0.8638
AT5G46060			Protein of unknown function, D...		Potri.001G372900 [exp]	24.00	0.8320
AT3G49690	MYB	ATMYB84, RAX3	REGULATOR OF AXILLARY MERISTEM...		Potri.002G113700 [exp]	30.16	0.8614
AT1G24430			HXXXD-type acyl-transferase fa...		Potri.010G054002 [exp]	35.49	0.8622
AT5G48130			Phototropic-responsive NPH3 fa...		Potri.014G164000 [exp]	37.34	0.8491

Compare expression of checked genes

Potri.004G098000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.