Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20480 63 / 9e-11 EFR EF-TU receptor (.1) AT3G47570 58 / 5e-09 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 57 / 1e-08 Leucine-rich repeat protein kinase family protein (.1) AT5G39390 56 / 1e-08 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 56 / 3e-08 Leucine-rich repeat protein kinase family protein (.1) AT5G62710 54 / 5e-08 Leucine-rich repeat protein kinase family protein (.1) AT2G31880 54 / 7e-08 SOBIR1, EVR SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) AT5G63710 54 / 7e-08 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 53 / 2e-07 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 51 / 7e-07 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G115801 [exp] 175 / 5e-53 AT1G67050 51 / 1e-07 unknown protein Potri.017G115900 [exp] 118 / 4e-29 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228200 [exp] 105 / 9e-25 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 104 / 2e-24 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 102 / 8e-24 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G100901 [exp] 99 / 1e-22 AT5G39390 394 / 9e-133 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033900 [exp] 96 / 2e-21 AT3G47570 786 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 96 / 2e-21 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228300 [exp] 94 / 5e-21 AT3G47570 743 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037840 [exp] 75 / 1e-14 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037310 [exp] 73 / 7e-14 AT3G47570 744 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 71 / 3e-13 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033384 [exp] 68 / 3e-12 AT3G47570 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 67 / 5e-12 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10040186 [exp] 65 / 2e-11 AT3G47570 697 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 65 / 4e-11 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038598 [exp] 65 / 4e-11 AT3G47570 671 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037311 [exp] 65 / 4e-11 AT3G47570 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038686 [exp] 64 / 4e-11 AT3G47570 752 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G098501.1 pacid=42796029 polypeptide=Potri.004G098501.1.p locus=Potri.004G098501 ID=Potri.004G098501.1.v4.1 annot-version=v4.1 ATGGCTAATGAGTTATGCTCCGATGATTCCTGCACGTGTCCCAGAATCTCATTTTCTCATGAATTTTCCCAAACAGACGTTGTGCCGATAGAACAACGTC CTCCCCAATCAAGTTCATCGAATTCCTATTTTTGCTTTCGCAATGACACCATCAATCCAGAATCTCCAGCAGCAGACGAGCTTCTCCTCAATGGAAAGAT CATCCCTATTGAAATCAAGAATATTATTTCTCTCTCAAAGCATGTACAAGAACAACCTCTAAGTCCACCTCCACAACCATTTCTTGATGCTACCATAACT AGTAATGATTCAAGGTATGATCAGGGCTCAAAGGTAATCGAGATTACTACAAGCAAAGAAAACAGCAATTATCAAGAGTTTTCATCCTTGAACGAGCATT TCCTTGATGGAGAAATCATTATTCCTGTCAAAATCAAGAAAAAGAAAAATATCCCGCCACCATTTTCACCTTTAGGCGCATTTCTTGATGCTGATGGTGA CATTGATGAAGATATCAGCAAAGGTTCAAATCAAGGGATGATCGAGAGTGCAAGAAATAAACCACCGGATGGCCACGAGAAAAAAAACTTGAAATCATCT TCACGTTCCAAGATGAGCAGTAGCTTGAGTTGTGCGCTAGCATATATGGAGGGAGCCCATGCCCTTTTCCATTATTCTTTTGTCGAAGCAATTCTGAGGT GTCTGTACCAAATGTCAAGCGAATGCCATTGTCGAAAAGGTTTTACTCGTGGACGTTGGCATCAAAGAGTTGTAGAGCTTGACCTGCACTACTGCCAACT AGTGGGCAGCCTATCTCCCCACATTGGCAGCTTGAGTTTCCTCATGGTATTAGACTTGGCAAATAATAGCTTAAGCCATAACGTTCCCCAAGAGTTAGGT CGTTTGCTTAAGCTGGAGAGGTTGGTCCTCAGGAACAACACATTCGATGGTGGAATCCCTGTCAACATCTCACGTTGCGCTAATCTCCGAGTCCTTGATT AA
AA sequence Show only first row Show all	>Potri.004G098501.1 pacid=42796029 polypeptide=Potri.004G098501.1.p locus=Potri.004G098501 ID=Potri.004G098501.1.v4.1 annot-version=v4.1 MANELCSDDSCTCPRISFSHEFSQTDVVPIEQRPPQSSSSNSYFCFRNDTINPESPAADELLLNGKIIPIEIKNIISLSKHVQEQPLSPPPQPFLDATIT SNDSRYDQGSKVIEITTSKENSNYQEFSSLNEHFLDGEIIIPVKIKKKKNIPPPFSPLGAFLDADGDIDEDISKGSNQGMIESARNKPPDGHEKKNLKSS SRSKMSSSLSCALAYMEGAHALFHYSFVEAILRCLYQMSSECHCRKGFTRGRWHQRVVELDLHYCQLVGSLSPHIGSLSFLMVLDLANNSLSHNVPQELG RLLKLERLVLRNNTFDGGIPVNISRCANLRVLD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20480		EFR	EF-TU receptor (.1)		Potri.004G098501 [exp]	0	1
AT5G62200			Embryo-specific protein 3, (AT...		Potri.010G214400 [exp]	3.87	0.9474
AT3G18670			Ankyrin repeat family protein ...		Potri.005G057900 [exp]	7.87	0.9276
					Potri.014G185732 [exp]	11.48	0.8302
AT5G10180		SULTR2;1, AST68	sulfate transporter 2;1, ARABI...		Potri.005G079000 [exp]	13.26	0.8969
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.001G340200 [exp]	14.66	0.9102
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Potri.015G101500 [exp]	14.96	0.8846
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.001G340400 [exp]	15.49	0.9136
					Potri.011G102400 [exp]	18.97	0.9116
AT3G28455		CLE25	CLAVATA3/ESR-RELATED 25 (.1)		Potri.017G074600 [exp]	20.24	0.8945	CLE25.1
AT5G51160			Ankyrin repeat family protein ...		Potri.014G051100 [exp]	22.84	0.9043

Compare expression of checked genes

Potri.004G098501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.