Plant FIBer expression Database

Potri.004G099000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G18410 369 / 1e-126 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G115566
[exp]
282 / 5e-95 AT2G18410 156 / 8e-47 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009164
[exp]
439 / 8e-153 AT2G18410 364 / 3e-123 unknown protein
Lus10028481
[exp]
410 / 6e-143 AT2G18410 348 / 1e-118 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF10483 Elong_Iki1 Elongator subunit Iki1
Representative CDS sequence
>Potri.004G099000.1 pacid=42794894 polypeptide=Potri.004G099000.1.p locus=Potri.004G099000 ID=Potri.004G099000.1.v4.1 annot-version=v4.1
ATGGCAGAATCAATGTGCAGAACCCTACGAGACGGATCGTTAGAAGGAGAGCAAGCACCAGCTCTTACTATCAAAGATACTGCAGCTTCTCCTTTCGGTT
TTCACGTCTTCTCTCACGTGCTGTCCCAGCTCTCCTCCTTCATTTTAGCCTCCAAATCCCAGTCCCGTGGTATTGTGATTGTTGCGTTTTCACGGAGCCC
TTCGTTTTACGTGGATTTACTGAAAAGTAGAGGGATTGATGTAAATTCATCTCATAAATGGGTTCAGATTTTGGATTGTTATACGGATCCGCTTTGTTGG
AAGGATCAGCTTATGGGGTCGGGAAATTTCATGGATGCTTCCCATGAAACTTCTTCAAGTTTGAGCCGTGTCTGTAAGGATGTGAAGGATTTGGACAAGC
TGTACTCTATGATTCTTGAACTGGGGAAAGGGTTGGTGGGACAAGGAAAGGATCGTTTTTCTGTTGCCATAGATTCGATAAATGAAATGCTAAGACATAC
ATCTACACCAACAGTTGCAGGCCTTTTAAGCAACCTTCGTAGCCATGAACAGATTTCTAGCATCTTTTGGTTGTTACATTCAGACCTTCATGAAATCAAA
GTTACATCTGCTCTTGAATATCTGTCCTCTGTGGTGGCCAGTGTAGAACCACTGCATCAAACTGCTGGTGGAAAGAGAGGGGATTTAGAAAACCTCTCTT
TGTTGGAACAGAACTTTGGGAAAGGAAAGCTTCAAGTCCGATTCAAGCGCCGGAATGGGCGTGTTCGTGTGGTGAATGAAGGATTTCATATTGATCAGTC
AAGCAACAATTTTACATCTGTTTCATCTGAAGATGGGCTAGTTAATCAAATTAATCAAGGCCTTGTGCCAAAGGTGCAGTTTAATCTAGAGTTAACAGAG
AAAGAACGGGTTGACAGGGCTAAGGTTGTACTGCCTTTTGAGCACCAAGGAGACGGTGGACCTATTCATATCTATGATGGTCGAAGATCTCTTACAGAGA
GCAAAACTGAGGCAACTCTTTCTTCAAGTGGGAATTCACAAAAAACTGACTCTGGTGAAGGTGAGATAATATATTTTCGTGATTCAGATGATGAGATGCC
AGATTCTGACGAGGACCCAGATGATGATTTGGATATATAA
AA sequence
>Potri.004G099000.1 pacid=42794894 polypeptide=Potri.004G099000.1.p locus=Potri.004G099000 ID=Potri.004G099000.1.v4.1 annot-version=v4.1
MAESMCRTLRDGSLEGEQAPALTIKDTAASPFGFHVFSHVLSQLSSFILASKSQSRGIVIVAFSRSPSFYVDLLKSRGIDVNSSHKWVQILDCYTDPLCW
KDQLMGSGNFMDASHETSSSLSRVCKDVKDLDKLYSMILELGKGLVGQGKDRFSVAIDSINEMLRHTSTPTVAGLLSNLRSHEQISSIFWLLHSDLHEIK
VTSALEYLSSVVASVEPLHQTAGGKRGDLENLSLLEQNFGKGKLQVRFKRRNGRVRVVNEGFHIDQSSNNFTSVSSEDGLVNQINQGLVPKVQFNLELTE
KERVDRAKVVLPFEHQGDGGPIHIYDGRRSLTESKTEATLSSSGNSQKTDSGEGEIIYFRDSDDEMPDSDEDPDDDLDI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G18410 unknown protein Potri.004G099000
[exp]
0 1
AT4G26780 MGE2, AR192 mitochondrial GrpE 2, Co-chape... Potri.015G065800
[exp]
2.00 0.8828
AT3G53580 diaminopimelate epimerase fami... Potri.016G120900
[exp]
6.32 0.8616
AT1G74260 PUR4 purine biosynthesis 4 (.1) Potri.010G200200
[exp]
8.83 0.8602
AT5G11340 Acyl-CoA N-acyltransferases (N... Potri.006G248900
[exp]
9.21 0.8400
AT5G48620 Disease resistance protein (CC... Potri.014G005300
[exp]
15.29 0.7826
AT4G20020 unknown protein Potri.003G015100
[exp]
18.86 0.8543
AT1G80270 PPR596 PENTATRICOPEPTIDE REPEAT 596 (... Potri.003G193600
[exp]
18.97 0.8341
AT3G25430 Polynucleotidyl transferase, r... Potri.014G177400
[exp]
23.10 0.8350
AT1G18450 ATARP4 actin-related protein 4 (.1) Potri.012G061300
[exp]
27.92 0.8309 ARP901,ARP4.2
AT1G60420 DC1 domain-containing protein ... Potri.010G059700
[exp]
29.69 0.7730

Potri.004G099000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.