Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	DIN9.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67070 573 / 0 PMI2, DIN9 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1) AT3G02570 562 / 0 PMI1, MEE31 PHOSPHOMANNOSE ISOMERASE 1, MATERNAL EFFECT EMBRYO ARREST 31, Mannose-6-phosphate isomerase, type I (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G115500 [exp] 806 / 0 AT3G02570 560 / 0.0 PHOSPHOMANNOSE ISOMERASE 1, MATERNAL EFFECT EMBRYO ARREST 31, Mannose-6-phosphate isomerase, type I (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033563 [exp] 627 / 0 AT1G67070 534 / 0.0 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1) Lus10009165 [exp] 625 / 0 AT1G67070 540 / 0.0 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1) Lus10028480 [exp] 624 / 0 AT1G67070 539 / 0.0 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1) Lus10017603 [exp] 538 / 0 AT3G02570 462 / 7e-162 PHOSPHOMANNOSE ISOMERASE 1, MATERNAL EFFECT EMBRYO ARREST 31, Mannose-6-phosphate isomerase, type I (.1) Lus10015062 [exp] 530 / 0 AT1G67070 505 / 1e-178 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF01238 [poplar] [flax] PMI_typeI Phosphomannose isomerase type I
Representative CDS sequence Show only first row Show all	>Potri.004G099100.1 pacid=42794848 polypeptide=Potri.004G099100.1.p locus=Potri.004G099100 ID=Potri.004G099100.1.v4.1 annot-version=v4.1 ATGGAGACTGGATTGGAGAAGAACCATCATGGAGGAGGAGGACTGAAGAGACTGAGATGTTCAGTTCAAAACTATGATTGGGGCAAAAAAGGGACAGAGG GGTCTGAGGTTGCAAGGCTATATGAATTGAATTCTGGGTCTGATATAGAATTGGAAAAGAAGAAGCCTTTTGCTGAGTTTTGGATGGGTACACATGGTTC TGGGCCTTCTTTTGTGGTGGAAAGTGGTGTGGAGAATGGCGACTCAATTGGGTCCGGGAGTATGGGTTTGAAAGAATGGATTCTTAAGAATCCTAATGTG CTTGGTGATGGAGTTTTGGATAAGTGGGGTTGTGATCTCCCTTTCTTGTTCAAGGTACTTTCTGTGGCAAAAGCATTGTCGATTCAGGCTCACCCAGACA AGGAATTGGCAAAAGTTCTACACAAGTTGCAGCCAAATCGTTATAAGGATGACAATCATAAGCCCGAGATGGCTTTAGCCATAACAGAGTTTGAGGCCCT CTGTGGTTTTATCAGTATTGGGGAGCTTAAAGGTGTGCTTCGAGATGTTCCTGAGATAGTAGAAGTGGTTGGCAGTGCGGAAGCAAACCAAGTCTTGCAA ATCCATGAGCAAGATCATGAGGAAAAAGTAAAATCTGTTCTGAGATCAGCTTTTACCCAACTCATGTCAGCGAGCCAAGAGATCACGGCTGAAGCAATAT CAAAATTAAAAAGTAGATTGTATATGGAAAGCAAGATAAGACAATTGACAGGAAAGGAACAGTTGGTCTTGCAGTTAGAAAAGCAATATCCAGCTGATAT TGGTGTCATATCAGCCTTCTTTCTTAATTATGTGAAGCTCAATTCTGGTGAAGCTTTGTATCTCGGGGCAAATGAACCCCATGCATATCTATACGGTGAG TGTATAGAATGCATGGCAACCTCAGACAATGTTGTGCGGGCTGGTCTTACACCCAAGCTCCGGGATATTCAAACTCTTTGTTCCATGCTCACATACAAAC AGGGCTTCCCTGAAATCTTAAAAGGATTTCCTTTGAGTCCATATATAACAAGATACCTTCCACCTTTTGATGAATTTGAGGTTGATCGCTGCATTCTTCC AAGAGGGGCATCAACAGTATTTCCCGCGATTCCAGGTCCATCCATTTTTCTTGTCATGGTTGGCGACGGTGCAATGTGCACAGGATCATCCAAAGATGTA GTTATGGAGGGAGATGTCCTCTTTGCACCTGCCAACTCTGAAATCAGCGTATCAACTGCATCTGAGTTGCATCTGTATAGGGCAGGAGTGAATAGCAGAT TCTTTCAAACCTTGAGGTGGTAG
AA sequence Show only first row Show all	>Potri.004G099100.1 pacid=42794848 polypeptide=Potri.004G099100.1.p locus=Potri.004G099100 ID=Potri.004G099100.1.v4.1 annot-version=v4.1 METGLEKNHHGGGGLKRLRCSVQNYDWGKKGTEGSEVARLYELNSGSDIELEKKKPFAEFWMGTHGSGPSFVVESGVENGDSIGSGSMGLKEWILKNPNV LGDGVLDKWGCDLPFLFKVLSVAKALSIQAHPDKELAKVLHKLQPNRYKDDNHKPEMALAITEFEALCGFISIGELKGVLRDVPEIVEVVGSAEANQVLQ IHEQDHEEKVKSVLRSAFTQLMSASQEITAEAISKLKSRLYMESKIRQLTGKEQLVLQLEKQYPADIGVISAFFLNYVKLNSGEALYLGANEPHAYLYGE CIECMATSDNVVRAGLTPKLRDIQTLCSMLTYKQGFPEILKGFPLSPYITRYLPPFDEFEVDRCILPRGASTVFPAIPGPSIFLVMVGDGAMCTGSSKDV VMEGDVLFAPANSEISVSTASELHLYRAGVNSRFFQTLRW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Potri.004G099100 [exp]	0	1	DIN9.2
AT1G15100		RHA2A	RING-H2 finger A2A (.1)		Potri.010G118000 [exp]	2.82	0.7162
AT4G34530	bHLH	bHLH063, CIB1	cryptochrome-interacting basic...		Potri.004G156000 [exp]	2.82	0.6185
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Potri.002G132900 [exp]	7.81	0.7317
AT1G67570			Protein of unknown function (D...		Potri.015G092200 [exp]	10.67	0.5771
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Potri.004G002500 [exp]	12.96	0.6511
AT2G40475		ASG8	ALTERED SEED GERMINATION 8, un...		Potri.006G107200 [exp]	14.14	0.6725
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Potri.010G234100 [exp]	20.85	0.6812	MANS.2
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Potri.002G023900 [exp]	21.54	0.6751
AT2G31945			unknown protein		Potri.003G215300 [exp]	21.77	0.6642
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Potri.003G026600 [exp]	24.81	0.5627

Compare expression of checked genes

Potri.004G099100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.