Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02560 315 / 5e-111 Ribosomal protein S7e family protein (.1.2) AT5G16130 311 / 1e-109 Ribosomal protein S7e family protein (.1) AT1G48830 306 / 7e-108 Ribosomal protein S7e family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G087900 [exp] 380 / 5e-137 AT3G02560 316 / 2e-111 Ribosomal protein S7e family protein (.1.2) Potri.017G115400 [exp] 379 / 2e-136 AT3G02560 315 / 4e-111 Ribosomal protein S7e family protein (.1.2) Potri.016G100400 [exp] 378 / 3e-136 AT3G02560 313 / 1e-110 Ribosomal protein S7e family protein (.1.2) Potri.015G046100 [exp] 109 / 1e-31 AT1G48830 110 / 1e-32 Ribosomal protein S7e family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034909 [exp] 324 / 1e-114 AT1G48830 331 / 1e-117 Ribosomal protein S7e family protein (.1.2) Lus10017497 [exp] 321 / 2e-113 AT1G48830 325 / 3e-115 Ribosomal protein S7e family protein (.1.2) Lus10023638 [exp] 321 / 2e-113 AT1G48830 330 / 4e-117 Ribosomal protein S7e family protein (.1.2) Lus10028789 [exp] 322 / 9e-111 AT1G48830 330 / 2e-113 Ribosomal protein S7e family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0652 [poplar] [flax] S24e_L23_L15e PF01251 [poplar] [flax] Ribosomal_S7e Ribosomal protein S7e
Representative CDS sequence Show only first row Show all	>Potri.004G099200.2 pacid=42796148 polypeptide=Potri.004G099200.2.p locus=Potri.004G099200 ID=Potri.004G099200.2.v4.1 annot-version=v4.1 ATGTACACTACAAAGAAGAAGATCCAAAAGGACAAGGATGCTGAACCAACTGAGTTTGAGGAGACAGTTGCCCAGGCATTATTTGACTTGGAAAATACCA GCTCAGACCTGAAAAGTGATCTAAAAGATCTCTTTATAAATTCTGCGGTTCAAATAGATGTTGCTGGAAACCGCAAAGCTATTGTCATTTATGTTCCCTA TAGACTGAGGAAAGCTTATCGCAAGGTTCATCTTCGCCTTGTTAGAGAGCTGGAGAAAAAGTTCAGTGGGAAGGATGTTGTTCTGCTTGCTACCCGAAGG ATCGTGCGTCCACCAAAGAAAGGCTCTGCTGTTCAGCGTCCCCGCTCCCGCACCCTAACTGCTGTGCATGAGGCCATGCTTGAGGATTTAGTGTATCCTG CTGAGATTGTTGGAAAACGCACCAGATACAGGATTGATGGATCCAAAATTAGCAAGATCTTCTTGGATCCCAAGGAGCGCAACAACACCGAGTACAAGCT AGAATCATATGCGGGAGTTTACCGGAAGCTTACAGGAAAAGATGTGGTTTTTGATTTCCCGGTAACAGAGGCCTGA
AA sequence Show only first row Show all	>Potri.004G099200.2 pacid=42796148 polypeptide=Potri.004G099200.2.p locus=Potri.004G099200 ID=Potri.004G099200.2.v4.1 annot-version=v4.1 MYTTKKKIQKDKDAEPTEFEETVAQALFDLENTSSDLKSDLKDLFINSAVQIDVAGNRKAIVIYVPYRLRKAYRKVHLRLVRELEKKFSGKDVVLLATRR IVRPPKKGSAVQRPRSRTLTAVHEAMLEDLVYPAEIVGKRTRYRIDGSKISKIFLDPKERNNTEYKLESYAGVYRKLTGKDVVFDFPVTEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02560			Ribosomal protein S7e family p...		Potri.004G099200 [exp]	0	1
AT2G27530		PGY1	PIGGYBACK1, Ribosomal protein ...		Potri.004G202832 [exp]	1.41	0.9816
AT2G37190			Ribosomal protein L11 family p...		Potri.006G077200 [exp]	2.23	0.9729	RPL12.4
AT5G04800			Ribosomal S17 family protein (...		Potri.010G241200 [exp]	2.44	0.9790
AT3G02560			Ribosomal protein S7e family p...		Potri.017G115400 [exp]	2.82	0.9795
AT4G25740			RNA binding Plectin/S10 domain...		Potri.004G073500 [exp]	4.00	0.9740
AT2G27710			60S acidic ribosomal protein f...		Potri.009G146200 [exp]	4.24	0.9715
AT5G02960			Ribosomal protein S12/S23 fami...		Potri.006G131500 [exp]	5.91	0.9709
AT3G56340			Ribosomal protein S26e family ...		Potri.019G057000 [exp]	6.70	0.9697	RPS26.2
AT3G52580			Ribosomal protein S11 family p...		Potri.009G019400 [exp]	8.24	0.9649
AT5G02960			Ribosomal protein S12/S23 fami...		Potri.016G085800 [exp]	9.38	0.9666	Pt-RPS23.5

Compare expression of checked genes

Potri.004G099200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.