Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38360 315 / 4e-108 alpha/beta-Hydrolases superfamily protein (.1) AT1G26360 47 / 9e-06 ATMES13, SP1L1 ARABIDOPSIS THALIANA METHYL ESTERASE 13, methyl esterase 13 (.1) AT4G02340 43 / 0.0002 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G115350 [exp] 101 / 3e-26 AT5G38360 0 / 1 alpha/beta-Hydrolases superfamily protein (.1) Potri.019G063900 [exp] 49 / 4e-06 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G107500 [exp] 42 / 0.0003 AT3G50440 240 / 1e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.009G107200 [exp] 42 / 0.0003 AT3G50440 244 / 4e-80 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.007G018900 [exp] 41 / 0.001 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028478 [exp] 488 / 2e-174 AT5G38360 298 / 2e-101 alpha/beta-Hydrolases superfamily protein (.1) Lus10009166 [exp] 474 / 6e-169 AT5G38360 299 / 1e-101 alpha/beta-Hydrolases superfamily protein (.1) Lus10015532 [exp] 46 / 2e-05 AT2G23600 240 / 2e-79 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10029878 [exp] 43 / 0.0003 AT3G05600 425 / 3e-150 alpha/beta-Hydrolases superfamily protein (.1) Lus10023326 [exp] 42 / 0.0006 AT3G50440 263 / 3e-88 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12697 [poplar] [flax] Abhydrolase_6 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.004G099300.1 pacid=42794793 polypeptide=Potri.004G099300.1.p locus=Potri.004G099300 ID=Potri.004G099300.1.v4.1 annot-version=v4.1 ATGGCTGCGTTTTCTCTCCTCTCCCTATTCCATCCAAACCCCTCAATCCCCAAAATGACCACAAAACCCCTTGCTGTCCTCAACAAAGCCTACAAAATGC AGGTCCCTTATGAGTTGAAGCAGGGGCAGACACGTATTTTCCACCAACTTCCATCTGGTCTGAACATGGAAGTGATTGAGCAAAAGGGTCGTGTTCTGGC AGACAAAGAAAACAATAGAAGACCAGGAAACAGTGAAAAAAACCCACCTTTGGTTTTTGTTCATGGAAGTTACCATGCTGCTTGGTGCTGGGCAGAGCAC TGGTTGCCTTTCTTTTCAGGGTTTGGTTTTGATAGCTATGCTGTTAGCTTGTTGGGTCAGGGTGAAAGTGATGCACCAGCTAGTCCTGTTGCTGGTTCTC TTCAGACACATGCAGGTGATGTAGCTGACTTCATCCAGAAAAAACTAACGTTTCCACCAGTCTTGCTTGGGCATTCATTTGGAGGGTTAATCATTCAGTG CTACATTGCAAATATAAGGAATAAACAAACTTTAGAAAAGAAAATGCTGTACCCAGATCTTGCTGGCGCTGTTCTTGTGTGCTCTGTACCGCCTTCAGGT AATAGCGGATTAGTGTGGCGTTATCTGTTTTCCAAACCTGTTGCTGCTTTTAAGGTGACACGCAGCTTGGCAGCTAAGGCTTTTCAAACTGATCTTTCAC TCTGCAAGGAAACATTTTTCACATCAACCATGGAGGATCATCTGGTGAAACGTTACCAAGCACTAATGAAAGAAAGCTCAAGAATGCCACTGTTTGATCT AAGGAAGCTTAATTCATCACTTCCAGTTCCTTCGGTGCTAAAATCATCTATTGAAGTGCTTGTGCTGGGAGCAAATGATGATTTCATAGTGGACACTGAA GGACTCAACGAAACAGGCAGGTTTTATGGCGTATCACCAATCTGTGTTGAAGGGGTTGCCCATGACATGATGCTAGATTGTTCATGGGAGAAAGGTGCTA GAGCTATTCTATCATGGTTAAATTGTTTAAGCAGATAG
AA sequence Show only first row Show all	>Potri.004G099300.1 pacid=42794793 polypeptide=Potri.004G099300.1.p locus=Potri.004G099300 ID=Potri.004G099300.1.v4.1 annot-version=v4.1 MAAFSLLSLFHPNPSIPKMTTKPLAVLNKAYKMQVPYELKQGQTRIFHQLPSGLNMEVIEQKGRVLADKENNRRPGNSEKNPPLVFVHGSYHAAWCWAEH WLPFFSGFGFDSYAVSLLGQGESDAPASPVAGSLQTHAGDVADFIQKKLTFPPVLLGHSFGGLIIQCYIANIRNKQTLEKKMLYPDLAGAVLVCSVPPSG NSGLVWRYLFSKPVAAFKVTRSLAAKAFQTDLSLCKETFFTSTMEDHLVKRYQALMKESSRMPLFDLRKLNSSLPVPSVLKSSIEVLVLGANDDFIVDTE GLNETGRFYGVSPICVEGVAHDMMLDCSWEKGARAILSWLNCLSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38360			alpha/beta-Hydrolases superfam...		Potri.004G099300 [exp]	0	1
AT2G46580			Pyridoxamine 5'-phosphate oxid...		Potri.014G100700 [exp]	1.00	0.8851
AT1G05070			Protein of unknown function (D...		Potri.005G038000 [exp]	1.41	0.8467
AT1G28090			Polynucleotide adenylyltransfe...		Potri.003G164400 [exp]	4.89	0.7994
AT5G47310			PPPDE putative thiol peptidase...		Potri.001G154400 [exp]	5.47	0.8003
AT5G19930			Protein of unknown function DU...		Potri.018G073000 [exp]	5.47	0.7789
					Potri.006G179001 [exp]	6.24	0.7508
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Potri.010G146400 [exp]	6.92	0.7509
AT1G22460			O-fucosyltransferase family pr...		Potri.005G161800 [exp]	7.14	0.7269
AT3G23600			alpha/beta-Hydrolases superfam...		Potri.008G201400 [exp]	8.36	0.7413
					Potri.003G039551 [exp]	13.41	0.7633

Compare expression of checked genes

Potri.004G099300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.