Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67080 248 / 2e-83 ABA4 abscisic acid (aba)-deficient 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G114900 [exp] 332 / 4e-116 AT1G67080 216 / 8e-71 abscisic acid (aba)-deficient 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009168 [exp] 253 / 4e-85 AT1G67080 253 / 1e-85 abscisic acid (aba)-deficient 4 (.1) Lus10028476 [exp] 251 / 2e-84 AT1G67080 248 / 8e-84 abscisic acid (aba)-deficient 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14108 [poplar] [flax] DUF4281 Domain of unknown function (DUF4281)
Representative CDS sequence Show only first row Show all	>Potri.004G099500.2 pacid=42794649 polypeptide=Potri.004G099500.2.p locus=Potri.004G099500 ID=Potri.004G099500.2.v4.1 annot-version=v4.1 ATGGCCTTCTCTTCCTGCTTTTGCTATCCTCAATTCTCACTCAAGAATGATTGCTCAGGGCTGACTATAAGATCTCATCACATTGTTGGGAAAGATCGAA AGTTGTTTTCTTCACTCAGAAGTAACAGCATCGAACTTTTTGGCCAACGGGTTGCAAGAGTGGGAGCTGACTTACACAGAGACTGGAATTTTCTTGGAGG TTCAAGAATTATCGTTCATCCAAAACTAACAAATTTCCTTGTCTATCGAAAAAGCTCAGGAGTAAATGCATCATGGTTGACAAGTTCTCAGATTGCGAGC AGTGTTTTTACTTTGGGAACAGCAGCTGTTCTCCCATTTTACACGCTCATGGTTGTAGCTCCTAAAGCTGAAGTGACCAGAAAGTCTATGGAAAGTAGCA TTCCATATATTGTGCTTGGACTTCTGTATGCATTTCTATTATACCTCTCTTGGACACCTGACACAATGCGTCTAATGTTTGCGAGTCAATACTGGTTACC AGAGCTGCCTGGTATAGCGAAGATGTTCTCCAATGAGATGACATTAGCTTCAGCATGGATTCATTTGTTAGCTGTAGACCTCTTTGCTGCAAGGCAGGTA TTTAATGATGGACTAGAAAATGAAGTTGAGACTCGACATTCGGTTTCTCTTTGCCTGCTCTTTTGTCCGATTGGAATCGCCACTCATTGCATCACTAAAG CACTAACCAAAGGTTCTGGAACTACCACGCATGACATGTAA
AA sequence Show only first row Show all	>Potri.004G099500.2 pacid=42794649 polypeptide=Potri.004G099500.2.p locus=Potri.004G099500 ID=Potri.004G099500.2.v4.1 annot-version=v4.1 MAFSSCFCYPQFSLKNDCSGLTIRSHHIVGKDRKLFSSLRSNSIELFGQRVARVGADLHRDWNFLGGSRIIVHPKLTNFLVYRKSSGVNASWLTSSQIAS SVFTLGTAAVLPFYTLMVVAPKAEVTRKSMESSIPYIVLGLLYAFLLYLSWTPDTMRLMFASQYWLPELPGIAKMFSNEMTLASAWIHLLAVDLFAARQV FNDGLENEVETRHSVSLCLLFCPIGIATHCITKALTKGSGTTTHDM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67080		ABA4	abscisic acid (aba)-deficient ...		Potri.004G099500 [exp]	0	1
AT4G28220		NDB1	NAD(P)H dehydrogenase B1 (.1)		Potri.013G147200 [exp]	18.11	0.8769
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Potri.005G053800 [exp]	18.43	0.8094	Pt-IAA8.1
AT3G49430		SRP34A, SR34a, ...	Serine/Arginine-Rich Protein S...		Potri.012G021800 [exp]	20.04	0.7986
					Potri.017G119750 [exp]	22.84	0.8648
AT1G11800			endonuclease/exonuclease/phosp...		Potri.004G010400 [exp]	27.74	0.8271
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Potri.014G124100 [exp]	32.86	0.8755
AT5G05800			unknown protein		Potri.001G243108 [exp]	35.88	0.8704
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Potri.009G157000 [exp]	36.98	0.8668
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Potri.008G093901 [exp]	38.15	0.8696
AT5G01510		RUS5	ROOT UV-B SENSITIVE 5, Protein...		Potri.006G099700 [exp]	38.32	0.8256

Compare expression of checked genes

Potri.004G099500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.