Plant FIBer expression Database

Potri.004G099900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.004G099900.1 pacid=42794222 polypeptide=Potri.004G099900.1.p locus=Potri.004G099900 ID=Potri.004G099900.1.v4.1 annot-version=v4.1
ATGAAGAAAGCAAGAGTGAGCGCCGTGTATGAAGGAAGGATTGGAAAGAGAAGCAAGGAAGAGAATGAGAACGACTCAAGGATAGCAAGAATGCATGCAA
GAGCTAGAAAGAACGGGCTGAGAGCAAAGAAGAATCGTTGCTTTGTGGTCACTGAAAGGCGGAGAAAGGCTAGGTCCAACACCAAGAGAAAGGTGGAGGC
TTCACCAAACAAAGAAGCGTGCATGTTGAAAGATCAAGGCAAGACACTTGACAATGTTGAAGCCGTTGAAATCATTGATGATGAGCCTATTCTTGACGTT
GCAGTCATCCTTGATTCTGAAACTGTTCACCAAATGGTGGCTGAAACTATGAGAGGAGAGGTGATCGTGGAGGAAAATGAAGGGCCTGCGTGGTGGGAGG
AGTACTGGCCAGTGAGCTACAGAACCAATGAGAATCAAGCGATGGAGGTGCTGGTGAAAGGTTTTGTTGGTGGAATGACTGAAGAGGAACTCTGGTGGGA
TGACATATGGAACTTTAGAGACATGGATGATCATTTCCCAAAGGCCCACAGAGCACGAGAACGGATCTAG
AA sequence
>Potri.004G099900.1 pacid=42794222 polypeptide=Potri.004G099900.1.p locus=Potri.004G099900 ID=Potri.004G099900.1.v4.1 annot-version=v4.1
MKKARVSAVYEGRIGKRSKEENENDSRIARMHARARKNGLRAKKNRCFVVTERRRKARSNTKRKVEASPNKEACMLKDQGKTLDNVEAVEIIDDEPILDV
AVILDSETVHQMVAETMRGEVIVEENEGPAWWEEYWPVSYRTNENQAMEVLVKGFVGGMTEEELWWDDIWNFRDMDDHFPKAHRARERI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.004G099900
[exp]
0 1
AT5G44120 ATCRA1, CRU1, C... CRUCIFERINA, RmlC-like cupins ... Potri.005G224400
[exp]
7.48 0.8803
AT4G30880 Bifunctional inhibitor/lipid-t... Potri.009G048900
[exp]
17.34 0.9573
AT1G32583 unknown protein Potri.010G145501
[exp]
18.54 0.9573
AT2G13680 GLS2, ATGSL02, ... ARABIDOPSIS THALIANA GLUCAN SY... Potri.005G058300
[exp]
20.63 0.8518
AT3G09370 MYB ATMYB3R-3, ATMY... myb domain protein 3R3, myb do... Potri.003G123800
[exp]
21.49 0.6671
AT2G05920 Subtilase family protein (.1) Potri.001G113533
[exp]
24.53 0.9573
AT3G04280 ARR22 response regulator 22 (.1.2.3) Potri.003G177300
[exp]
26.22 0.9573
AT5G58510 unknown protein Potri.001G280832
[exp]
28.77 0.7510
AT5G05800 unknown protein Potri.003G192350
[exp]
30.59 0.7245
Potri.014G045150
[exp]
30.75 0.9573

Potri.004G099900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.