Plant FIBer expression Database

Potri.004G100301 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G114400
[exp]
112 / 9e-30 AT5G15270 259 / 8e-78 RNA-binding KH domain-containing protein (.1.2)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.004G100301.1 pacid=42794896 polypeptide=Potri.004G100301.1.p locus=Potri.004G100301 ID=Potri.004G100301.1.v4.1 annot-version=v4.1
ATGTCTTTATCGAGCTTTCATGTCTTCTGGTGGACAGAACATGAATTCCCACCAGGGTTCCTACCAAACCAGCGTAACTTCCCAGCAAAGTTCATACCAA
AGCATGAATGCTCACCAGCAAGATGCCTATCAAAGCATGAGTGCCCAGCCGGACCCCTACCAAAGCATGAACACTCAGCAGATCACCTAACTAAACGTCC
ATGCTCAGCAGAACACGTACCGGGACATGAATGCCCGGCAGAGCCCCTATTCAAATATGAGGGCACAGCAAAGCCCCAACTCCATGACTGCCCAGCAAGG
TGTCCACAAATACTAATGCTCCACAAAGTTCCTCCAACAACAGTGCTCAGCAAGTCGCTTACCATTACCGAGCACCGACTTTGA
AA sequence
>Potri.004G100301.1 pacid=42794896 polypeptide=Potri.004G100301.1.p locus=Potri.004G100301 ID=Potri.004G100301.1.v4.1 annot-version=v4.1
MSLSSFHVFWWTEHEFPPGFLPNQRNFPAKFIPKHECSPARCLSKHECPAGPLPKHEHSADHLTKRPCSAEHVPGHECPAEPLFKYEGTAKPQLHDCPAR
CPQILMLHKVPPTTVLSKSLTITEHRL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.004G100301
[exp]
0 1
Potri.004G104301
[exp]
2.00 0.8158
AT3G15280 unknown protein Potri.001G398300
[exp]
7.48 0.8038
AT5G56140 RNA-binding KH domain-containi... Potri.011G168000
[exp]
15.68 0.7391
AT2G25910 3'-5' exonuclease domain-conta... Potri.018G058900
[exp]
15.74 0.7480
AT3G22780 CPP ATTSO1, TSO1 CHINESE FOR 'UGLY', Tesmin/TSO... Potri.013G038301
[exp]
17.66 0.7404
AT1G73150 GTE3 global transcription factor gr... Potri.001G285700
[exp]
17.77 0.6751 GTE906
AT2G01460 P-loop containing nucleoside t... Potri.010G111900
[exp]
20.49 0.7609
AT5G12100 pentatricopeptide (PPR) repeat... Potri.010G249800
[exp]
22.44 0.6908
AT5G52520 PRORS1, OVA6 PROLYL-TRNA SYNTHETASE 1, OVUL... Potri.004G078932
[exp]
25.41 0.7451
AT5G27860 unknown protein Potri.005G023000
[exp]
25.69 0.7382

Potri.004G100301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.