Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38460 568 / 0 ALG6, ALG8 glycosyltransferase family (.1.2) AT2G44660 95 / 1e-20 ALG6, ALG8 glycosyltransferase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G114100 [exp] 795 / 0 AT5G38460 595 / 0.0 ALG6, ALG8 glycosyltransferase family (.1.2) Potri.014G053200 [exp] 86 / 1e-17 AT2G44660 669 / 0.0 ALG6, ALG8 glycosyltransferase family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017594 [exp] 585 / 0 AT5G38460 682 / 0.0 ALG6, ALG8 glycosyltransferase family (.1.2) Lus10043344 [exp] 94 / 3e-20 AT2G44660 725 / 0.0 ALG6, ALG8 glycosyltransferase family (.1) Lus10019495 [exp] 92 / 2e-19 AT2G44660 717 / 0.0 ALG6, ALG8 glycosyltransferase family (.1) Lus10033554 [exp] 69 / 8e-14 AT5G38460 127 / 2e-35 ALG6, ALG8 glycosyltransferase family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0111 [poplar] [flax] GT-C PF03155 [poplar] [flax] Alg6_Alg8 ALG6, ALG8 glycosyltransferase family
Representative CDS sequence Show only first row Show all	>Potri.004G100500.1 pacid=42795537 polypeptide=Potri.004G100500.1.p locus=Potri.004G100500 ID=Potri.004G100500.1.v4.1 annot-version=v4.1 ATGGAAAAGGAGAGAAAGAAGTTCCAAAAACCCAAGCCAGAAACTGAAAGCAACAATCTTTATGACATCTCCTGCTTGTTTTTTCAAAAAGGAATAATGG GCTCATTTCTTTTAATCAGCATCTTCAGTCTCCTCCTCAGAGTTTCAGTTTCTCTCCATTCATATTCAGGTGCAGGCAGTCCACCAAAATTTGGTGACTT TGAAGCTCAACGTCATTGGATGGAGATTACAACCAATTTACCAATTAAAGATTGGTACTTTAACACTACTAACAATGATTTAAGTTATTGGGGTCTCGAT TACCCTCCATTAACTGCTTATCAGAGTTACTTTCATGGTCTTATTCTCAAGTATTTTGATCCAAATTCAGTTTCACTGTTTAGTTCTCGTGGTTATGAGA CACATTTCGGGAAGTTGCTAATGAGGTGGACAGTTTTATCATCTGATTTGCTGATATTTTTCCCTGCTGTGCTTTATTTTATTTTTGTTTATCATGGGGG TAACCGGTCCGGTGGAGATAAGAGTGATGTAGCATGGCACATGGCTGTTATTTTAATCAATCCATGCTTGATCTTAATTGATCATGGCCATTTTCAGTAT AATTGCATCAGCTTGGGCCTTACTTTAGGTGCTGTTGCTGCTGTTCTCTCACGGAAAAATCTTTTAGCTTGTGTTCTGTTCTGTCTTTCTCTTAACCATA AACAGATGAGTGCATATTATGCTCCTGCGTTTTTCAGCCATCTGTTTGGTAGCTGCCTAAGGCGTAAGAATCCCCCACTTGAGGTTTTAAAATTGGGCTT GGCTGTCCTAGGAACATTTGCTATTGTTTGGTGGCCATATCTTCATTCAAGAGATGCCTTTTTTGGGGTTCTTTCACGTCTTGCTCCTTTTGAGAGAGGA ATATACGAAGATTATGTGGCTAACTTTTGGTGCAGTACCTCAATTTTAATTAAGTGGAAGAGATTATTTACAACACATTCTCTGAGATTTGTCAGCTTGG TTGCTACTATATTGACTTTTCTGCCTTCAATGATTCAACAAATATTGGCTCCGAGCAGTAAAGGTTTCCTTTATGGGTTGCTGAATAGTTCTTTCGCGTT CTACTTATTTTCATTCCAAGTTCACGAGAAGTCTATTCTGCTGCCGCTTCTGCCTGCAACCTTGTTGGCAATGGAATTGCCTGGTGTGCACTCTATGTTA TTAATGCTTTGTGCCTTGCTCTCTATGTTTCCTCTTCTGTGTCGTGACAAACTGGTTGTGCCCTACATGGCTCTTTATGCTTCTTCCATCCTTCTTTACC TTGCACCCAGTGGAAGAAGGCAAATTAAGAAGCATCTCTCTAGGCCTATGATCACATTCTCAATTGTGATGATTCAATTTCTGTGCTCTCTTATTTTTCA TATTATATACTTAACCATTCGCCCTCCTGAGAAGTATCCTTACCTTTTTGAAGCAATGATCATGAATTTCTGCTTCTCTCATTTATTGGGCTTTACTGTT TACACCAATGTAAAGCAATGGATGCTGCCAAGACAATTTACATCTGGAGACAAAGAAAAGAAACTTAATTGA
AA sequence Show only first row Show all	>Potri.004G100500.1 pacid=42795537 polypeptide=Potri.004G100500.1.p locus=Potri.004G100500 ID=Potri.004G100500.1.v4.1 annot-version=v4.1 MEKERKKFQKPKPETESNNLYDISCLFFQKGIMGSFLLISIFSLLLRVSVSLHSYSGAGSPPKFGDFEAQRHWMEITTNLPIKDWYFNTTNNDLSYWGLD YPPLTAYQSYFHGLILKYFDPNSVSLFSSRGYETHFGKLLMRWTVLSSDLLIFFPAVLYFIFVYHGGNRSGGDKSDVAWHMAVILINPCLILIDHGHFQY NCISLGLTLGAVAAVLSRKNLLACVLFCLSLNHKQMSAYYAPAFFSHLFGSCLRRKNPPLEVLKLGLAVLGTFAIVWWPYLHSRDAFFGVLSRLAPFERG IYEDYVANFWCSTSILIKWKRLFTTHSLRFVSLVATILTFLPSMIQQILAPSSKGFLYGLLNSSFAFYLFSFQVHEKSILLPLLPATLLAMELPGVHSML LMLCALLSMFPLLCRDKLVVPYMALYASSILLYLAPSGRRQIKKHLSRPMITFSIVMIQFLCSLIFHIIYLTIRPPEKYPYLFEAMIMNFCFSHLLGFTV YTNVKQWMLPRQFTSGDKEKKLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38460			ALG6, ALG8 glycosyltransferase...		Potri.004G100500 [exp]	0	1
AT2G16780		MSI02, NFC2, NF...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.009G135100 [exp]	10.63	0.7369	NFC903,Pt-MSI2.1
AT2G40550		ETG1	E2F target gene 1 (.1)		Potri.019G056200 [exp]	13.49	0.7305
AT2G20580		RPN1A, AtRPN1a	26S proteasome regulatory subu...		Potri.007G137200 [exp]	22.31	0.6916
AT1G63940		MDAR6	monodehydroascorbate reductase...		Potri.001G099600 [exp]	38.10	0.5935
AT5G19010		ATMPK16	mitogen-activated protein kina...		Potri.008G200800 [exp]	49.17	0.5787	ATMPK16.2
AT3G16200			unknown protein		Potri.003G051200 [exp]	49.79	0.6700
AT1G67320		EMB2813	EMBRYO DEFECTIVE 2813, DNA pri...		Potri.003G169300 [exp]	51.65	0.6508
AT2G25570			binding (.1.2.3)		Potri.001G219400 [exp]	52.04	0.5915
AT3G21430	MYB	ATALY3	ARABIDOPSIS THALIANA ALWAYS EA...		Potri.008G216600 [exp]	55.31	0.6300
AT2G34930			disease resistance family prot...		Potri.003G196766 [exp]	65.52	0.6273

Compare expression of checked genes

Potri.004G100500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.