Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02540 476 / 6e-168 RAD23C, RAD23-3 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) AT5G38470 463 / 2e-163 RAD23D RADIATION SENSITIVE23D, Rad23 UV excision repair protein family (.1.2) AT1G79650 386 / 3e-133 AtAO1, RAD23B, RAD23 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) AT1G16190 365 / 4e-125 RAD23A RADIATION SENSITIVE23A, Rad23 UV excision repair protein family (.1) AT5G16090 96 / 3e-23 unknown protein AT2G36170 52 / 3e-08 Ubiquitin supergroup;Ribosomal protein L40e (.1) AT3G52590 52 / 3e-08 HAP4, ERD16, UBQ1, EMB2167 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) AT1G65350 54 / 6e-08 UBQ13 ubiquitin 13 (.1) AT3G62250 52 / 6e-08 UBQ5 ubiquitin 5 (.1) AT2G47110 52 / 6e-08 UBQ6 ubiquitin 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G114000 [exp] 579 / 0 AT3G02540 369 / 9e-126 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Potri.010G126200 [exp] 458 / 3e-161 AT5G38470 367 / 1e-125 RADIATION SENSITIVE23D, Rad23 UV excision repair protein family (.1.2) Potri.008G119700 [exp] 392 / 2e-135 AT5G38470 380 / 3e-131 RADIATION SENSITIVE23D, Rad23 UV excision repair protein family (.1.2) Potri.003G186600 [exp] 360 / 4e-123 AT1G79650 474 / 4e-168 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) Potri.001G038000 [exp] 284 / 4e-93 AT1G79650 456 / 6e-161 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) Potri.015G007100 [exp] 52 / 3e-08 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.012G024300 [exp] 52 / 3e-08 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.016G077200 [exp] 52 / 3e-08 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.016G077000 [exp] 51 / 3e-08 AT3G52590 194 / 1e-65 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034308 [exp] 438 / 2e-153 AT3G02540 491 / 7e-174 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Lus10034307 [exp] 433 / 2e-150 AT3G02540 493 / 1e-173 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Lus10041465 [exp] 430 / 4e-150 AT3G02540 494 / 4e-175 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Lus10026110 [exp] 360 / 5e-123 AT1G79650 519 / 0.0 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) Lus10041464 [exp] 246 / 6e-78 AT3G02540 411 / 6e-142 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Lus10008710 [exp] 189 / 1e-58 AT1G79650 248 / 2e-82 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) Lus10020933 [exp] 53 / 3e-08 ND 64 / 6e-13 Lus10008873 [exp] 52 / 3e-08 AT3G52590 261 / 5e-92 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Lus10030894 [exp] 52 / 7e-08 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10030595 [exp] 52 / 7e-08 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [poplar] [flax] UBA PF00627 [poplar] [flax] UBA UBA/TS-N domain CL0214 [poplar] [flax] PF09280 [poplar] [flax] XPC-binding XPC-binding domain
Representative CDS sequence Show only first row Show all	>Potri.004G100700.1 pacid=42795532 polypeptide=Potri.004G100700.1.p locus=Potri.004G100700 ID=Potri.004G100700.1.v4.1 annot-version=v4.1 ATGAAGGTTTTTGTAAAGACTTTGAAGGGTACCAACTTCGAGATCGAAGTTAAACCTGAAGATACGGTGGCTGATGTTAAGAAAAACATAGAGAGTGTAC AGGGAGCGGATGTTTATCCAGCGGCACAACAGATGCTAGTTTATCAAGGGAAAGTACTTAAGGATGATACAACATTGGATGAAAATAAAGTTTCTGAAAG TAGTTTTTTTGTTGTTATGTTAAGCAAGAGTAAGGTTTCATCTGGTGGACCCTCAACTGCACCAGCTGCACCAGCAAGCCAAGCCCCACCTGCGAGTTCC TTGCCTTCTAATGTGACACAACCATCAATAACATCTCAAGCTCCTGTACCAGCTGCTGCTTTGCCACAATCTGCTGCTGAATCCAGTCCTGCTGTAGTTA CTTCAGCTCTCAGTTTAGATACAAACATGTATGGGCAAGCAGCATCAAATCTCGTTGCAGGAAGTAATTTAGAAGCAACCATTCAAGAGATTCTTGATAT GGGTGGAGGAGACTGGAACCGAGAAACAGTTGTTCGTGCTCTACGTGCTGCATTCAACAACCCTGAACGAGCTATTGATTATTTATACTCTGGTATTCCA GAGCAAGCTGAAGTTCCACCAGTTGCCCAAGTTGTCCAAGGTCCAGCAAGTGGCAACGCTGTGAATCCTCCAGCTCTGGCTCCACAACCAGTTGTGGCTC CTAATAGCGGTCCGAATGCAAATCCACTAGATCTCTTTCCACAGGGCCATCACAGTACGGGTTCTAATGCTGGTACAGGCAACTTGGATTTTTTACGCAA TAGCCAACAGTTCCAAGCCTTGCGAGCTATGGTGCAAGCAAACCCTCAAATCCTACAGCCAATGCTTCAGGAGCTAGGGAAGCAAAATCCATACCTGATG CGTCTCATTCAAGAGCATCAGGCTGATTTCTTGCGCTTGATAAACGAACCTGTTGAAGGAGAGGGGAATGTGCTGGGCCAATTGGCCTCTGCAATGCCAC AAGCAGTGACTGTCACCCCTGAGGAGCGCGAGGCAATTGAACGTCTTGAAGCAATGGGCTTTGATCGAGCCATAGTATTGGAGGTGTATTTTGCATGCAA CAAGAATGAAGAACTGGCGGCCAACTATCTATTAGACCACATGCATGAATTCGACGAATGA
AA sequence Show only first row Show all	>Potri.004G100700.1 pacid=42795532 polypeptide=Potri.004G100700.1.p locus=Potri.004G100700 ID=Potri.004G100700.1.v4.1 annot-version=v4.1 MKVFVKTLKGTNFEIEVKPEDTVADVKKNIESVQGADVYPAAQQMLVYQGKVLKDDTTLDENKVSESSFFVVMLSKSKVSSGGPSTAPAAPASQAPPASS LPSNVTQPSITSQAPVPAAALPQSAAESSPAVVTSALSLDTNMYGQAASNLVAGSNLEATIQEILDMGGGDWNRETVVRALRAAFNNPERAIDYLYSGIP EQAEVPPVAQVVQGPASGNAVNPPALAPQPVVAPNSGPNANPLDLFPQGHHSTGSNAGTGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPYLM RLIQEHQADFLRLINEPVEGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFDE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02540		RAD23C, RAD23-3	RADIATION SENSITIVE23C, PUTATI...		Potri.004G100700 [exp]	0	1
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Potri.001G013800 [exp]	1.00	0.8411
AT5G10320			unknown protein		Potri.005G073600 [exp]	1.73	0.7489
AT4G32440			Plant Tudor-like RNA-binding p...		Potri.018G030500 [exp]	4.69	0.7559
AT3G62000			S-adenosyl-L-methionine-depend...		Potri.002G183600 [exp]	13.00	0.6925
AT5G04250			Cysteine proteinases superfami...		Potri.008G036700 [exp]	13.26	0.7005
AT1G25380		ATNDT2	NAD+ transporter 2, ARABIDOPSI...		Potri.010G121500 [exp]	14.42	0.6726
AT1G16250			Galactose oxidase/kelch repeat...		Potri.010G004500 [exp]	16.30	0.7033
AT4G37740	GRF	ATGRF2	growth-regulating factor 2 (.1...		Potri.003G100800 [exp]	18.76	0.6879
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Potri.003G130301 [exp]	22.44	0.7247
AT5G47900			Protein of unknown function (D...		Potri.014G123800 [exp]	24.39	0.6631

Compare expression of checked genes

Potri.004G100700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.