Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68590 136 / 4e-41 Ribosomal protein PSRP-3/Ycf65 (.1.2) AT5G15760 130 / 1e-38 Ribosomal protein PSRP-3/Ycf65 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G127300 [exp] 139 / 3e-42 AT1G68590 188 / 2e-61 Ribosomal protein PSRP-3/Ycf65 (.1.2) Potri.008G118700 [exp] 135 / 1e-40 AT1G68590 187 / 4e-61 Ribosomal protein PSRP-3/Ycf65 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034302 [exp] 130 / 1e-38 AT1G68590 173 / 2e-55 Ribosomal protein PSRP-3/Ycf65 (.1.2) Lus10021693 [exp] 129 / 2e-38 AT1G68590 178 / 9e-58 Ribosomal protein PSRP-3/Ycf65 (.1.2) Lus10035036 [exp] 129 / 3e-38 AT1G68590 181 / 9e-59 Ribosomal protein PSRP-3/Ycf65 (.1.2) Lus10041469 [exp] 129 / 3e-38 AT1G68590 175 / 2e-56 Ribosomal protein PSRP-3/Ycf65 (.1.2) Lus10033551 [exp] 120 / 8e-35 AT5G15760 115 / 3e-33 Ribosomal protein PSRP-3/Ycf65 (.1) Lus10017590 [exp] 120 / 8e-35 AT5G15760 116 / 3e-33 Ribosomal protein PSRP-3/Ycf65 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04839 [poplar] [flax] PSRP-3_Ycf65 Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
Representative CDS sequence Show only first row Show all	>Potri.004G101000.1 pacid=42796713 polypeptide=Potri.004G101000.1.p locus=Potri.004G101000 ID=Potri.004G101000.1.v4.1 annot-version=v4.1 ATGTTGGCATCCATGGCCACACAACCCAAAATCCAAACCCACTTACAACCCTCAACATTTCCTTCACAGAGCCTCCTGCGTAAACCCCTTAAAACCCCTA TATTCTCTATCAAACCGAAACCTTCTTGTTTTCACTTAAAATCCCTTTCTACTCTCAAAACCCCAGCAAGACTCAAACTTTCTGCTCCAAAAGCTCAACG AACACTCCCTGAAGAAGAAAAAGAAAACGAAACATCCACTGAGAAAGAGAAGCTTGGAGTGGTGGTGAAGCCAATAGAGAAATCAAGAGTAGTATTGAAG TTCATTTGGATGCAGAAGGTAATTGGAATTGCACTAAACCAAGTGATACCAGGCCATGGCACAATCCCTTTGAGTCCCTACTACTTTTGGCCCAAGGAAG ATGCTTGGGAGCAGCTTAGACTATTGTTAGTAGGCAAGCCATGGATATCGCGGAAGCAATTGCATGATCTTCTCAATCAGGCTACTGATATCATTGAATT GTGGCAGGATACAGGTTCCAATCAATAG
AA sequence Show only first row Show all	>Potri.004G101000.1 pacid=42796713 polypeptide=Potri.004G101000.1.p locus=Potri.004G101000 ID=Potri.004G101000.1.v4.1 annot-version=v4.1 MLASMATQPKIQTHLQPSTFPSQSLLRKPLKTPIFSIKPKPSCFHLKSLSTLKTPARLKLSAPKAQRTLPEEEKENETSTEKEKLGVVVKPIEKSRVVLK FIWMQKVIGIALNQVIPGHGTIPLSPYYFWPKEDAWEQLRLLLVGKPWISRKQLHDLLNQATDIIELWQDTGSNQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Potri.004G101000 [exp]	0	1
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.010G073166 [exp]	1.73	0.9670
AT2G20690			lumazine-binding family protei...		Potri.019G100500 [exp]	3.00	0.9628
AT1G30260		AGL79	unknown protein		Potri.011G081001 [exp]	4.89	0.9564
					Potri.009G016950 [exp]	11.61	0.8938
AT4G14870		SECE1	secE/sec61-gamma protein trans...		Potri.008G153400 [exp]	12.84	0.9549
AT1G68540		TKPR2, CCRL6	tetraketide alpha-pyrone reduc...		Potri.008G120200 [exp]	13.85	0.9083
AT1G13480			Protein of unknown function (D...		Potri.008G109400 [exp]	18.11	0.9171
AT5G38060			unknown protein		Potri.017G122500 [exp]	18.97	0.9291
AT1G09700		DRB1, HYL1	HYPONASTIC LEAVES 1, DSRNA-BIN...		Potri.005G153200 [exp]	19.13	0.8957
AT3G23360			Protein phosphatase 2C family ...		Potri.010G070100 [exp]	21.90	0.9235

Compare expression of checked genes

Potri.004G101000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.