Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02280 811 / 0 Flavodoxin family protein (.1) AT4G30210 232 / 5e-67 AR2, ATR2 P450 reductase 2 (.1.2) AT4G24520 230 / 2e-66 AR1, ATR1 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) AT3G24710 88 / 3e-21 unknown protein AT1G30510 56 / 2e-08 ATRFNR2 root FNR 2 (.1.2.3) AT4G05390 53 / 3e-07 ATRFNR1 root FNR 1 (.1.2) AT1G75200 44 / 0.0003 flavodoxin family protein / radical SAM domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G092100 [exp] 238 / 4e-69 AT4G30210 984 / 0.0 P450 reductase 2 (.1.2) Potri.005G153800 [exp] 234 / 7e-68 AT4G24520 974 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.006G167200 [exp] 230 / 3e-66 AT4G30210 965 / 0.0 P450 reductase 2 (.1.2) Potri.011G027100 [exp] 196 / 1e-59 AT3G02280 144 / 2e-41 Flavodoxin family protein (.1) Potri.002G106566 [exp] 156 / 6e-43 AT4G24520 459 / 2e-159 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.002G106632 [exp] 69 / 8e-13 AT4G24520 269 / 1e-85 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.001G371900 [exp] 44 / 0.0002 AT4G05390 635 / 0.0 root FNR 1 (.1.2) Potri.002G260700 [exp] 44 / 0.0002 AT1G75200 896 / 0.0 flavodoxin family protein / radical SAM domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017589 [exp] 790 / 0 AT3G02280 810 / 0.0 Flavodoxin family protein (.1) Lus10015525 [exp] 216 / 3e-61 AT4G30210 1009 / 0.0 P450 reductase 2 (.1.2) Lus10019996 [exp] 211 / 2e-59 AT4G30210 1013 / 0.0 P450 reductase 2 (.1.2) Lus10025485 [exp] 183 / 2e-51 AT4G30210 681 / 0.0 P450 reductase 2 (.1.2) Lus10006972 [exp] 182 / 4e-49 AT4G30210 983 / 0.0 P450 reductase 2 (.1.2) Lus10033550 [exp] 140 / 3e-39 AT3G02280 121 / 7e-33 Flavodoxin family protein (.1) Lus10032842 [exp] 150 / 5e-38 AT4G24520 901 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Lus10002416 [exp] 113 / 2e-27 AT4G24520 474 / 1e-164 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Lus10038538 [exp] 55 / 1e-07 AT4G05390 624 / 0.0 root FNR 1 (.1.2) Lus10023266 [exp] 49 / 1e-05 AT4G05390 569 / 0.0 root FNR 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0091 [poplar] [flax] NAD_Ferredoxin PF00175 [poplar] [flax] NAD_binding_1 Oxidoreductase NAD-binding domain CL0042 [poplar] [flax] Flavoprotein PF00258 [poplar] [flax] Flavodoxin_1 Flavodoxin CL0076 [poplar] [flax] FAD_Lum_binding PF00667 [poplar] [flax] FAD_binding_1 FAD binding domain
Representative CDS sequence Show only first row Show all	>Potri.004G101100.1 pacid=42796226 polypeptide=Potri.004G101100.1.p locus=Potri.004G101100 ID=Potri.004G101100.1.v4.1 annot-version=v4.1 ATGGAAAAGGAACCAGCAAAGCTACTGATACTATACGCTACTCAAACCGGAAACGCTTTGGATGCGGCGGAGCGTATTGGCCGCGAAGCCGAGCGACGAG GCTGCGCCGCCTCTGTTCGCTCTATCGACGATTTTGATGCTAGTTCTTTACCTCATGAGGACACTGTAATTTTTGTTGTTTCCACCACAGGTCAAGGAGA TACACCAGATTCCATGAAGTCGTTTTGGAAGTATCTTCTGCTGAGAAATATTGCTAAGAATTGGCTGGAAGGAGTTCATTATGCTGTTTTCGGATTGGGT GATTCTGGCTACCAGAAATATAATTTTGTGGCAAAGAAGCTTGACAGAAGAATTTCAGATCTTGGGGCAACAGCTGTTGTTGAAAGAGGTTTAGGAGACG ATCAGCATCCTTCAGGGTATGAAGGTGCTTTGGATCCTTGGATGTCATCCTTGTGGAGCATGCTGTATCAGATTAACCCTAAATTCTTCCCAAATGGTCC AGATTTTGTGATATCAGATACAAAACTCATCAATCAACCTAAATTTCAAATAACATATCATGAAATTGACAAGGTGGACTTACAATCATCTTCTGCTCCA GGTCTTGATCATGTGCAGATGCAAACTGGTAGAGCTCGTTCCATGTCTCCTGGAAAAGTTTCTCATATCAAGAATATTCCTGACTGCTTTCTTAAAATGA TCAAGAATCAACCATTGTGTAGAGCTGGCTGTGGAAAAGATGTGCGCCATTTTGAATTTGAGTTTGTTTCATCTATAATTGAATATGGAGTTGGTGATGT CCTGGAAGTTCTTCCTGGTCAAGATCCTGCTGCAGTGGATGCTTTCCTTCAGTGTTGTAATTTGAATCCTGAATCTCTCATCACTGTGCATCCTATAGGG ATGGAGAGTCGTCATCGTGATGCTGAAGGCAATGACTACAAAGTCCCTATAAAATTGAAAACTTTCGTGGAATTGACCATGGATATTGCATCAGCTTCCC CTAGGCGCTATTTCTTCGAGGTGATGAGTTATTTTGCAACAGCCGAACATGAAAAGGAGAGACTTCAATATTTCGCCTCTCCTGAAGGAAGAGATGATCT TTACCAGTACAACCAGAAGGAACGAAGAACTGTTCTAGAGGTACTGGAAGATTTCCCTTCTGTGCAAATGCCATTTGAGTGGCTGGTGCAGTTGGTTCCT CCATTGAAAACAAGGGCTTTCTCCATTTCTTCTTCCCCTTCAGCTCACCCCAATCAAGTGCACTTGACTGTGAATGTAGTTTCATGGACAACTCCTTTTA AGAGGAAGCGAACTGGTCTCTGCTCTACGTGGCTAGCTGGACTTGATCCACAAGATGGTATGGGTGTATATATTCCAGCATGGTTTTGCAAAGGCTCCCT TCCTCCTCCACCACCATCAATTCCCCTTGTACTCGTTGGGCCTGGTACAGGCTGCGCTCCTTTTCGTGGATTTGTAGAGGAAAGAGCCATACAAGACATG TCCGGCTCAGCTGCTCCTATTATGTTGTTCTTTGGTTGTCGAAATCAGGAGAATGACTTCTTGTACAAGGATTTTTGGTTGTCTCATGCACAAAACAGTG GACCGCTATCCATAGCAAGGGGTGGAGGGTTTTATGTAGCCTTCTCAAGAGATCAACCACAAAAAGTTTATGTGCAGCATAAGATGCGGGAACAGAGCCA GAGGGTTTGGAATTTGTTAGTGGAGGGGGCTTCAATATACGTCTCTGGTTCATCAACCAAAATGCCTTCAGATGTAATGTCAGCCTTGGAGGAAATTATA TCCAAAGAGGCTGGAGTTTCGAGGGAAACTGCTGTTTTGCAGCTTAGGAGATTGGAAAAGGATGGTAGATACCATGTTGAAGCATGGTCTTGA
AA sequence Show only first row Show all	>Potri.004G101100.1 pacid=42796226 polypeptide=Potri.004G101100.1.p locus=Potri.004G101100 ID=Potri.004G101100.1.v4.1 annot-version=v4.1 MEKEPAKLLILYATQTGNALDAAERIGREAERRGCAASVRSIDDFDASSLPHEDTVIFVVSTTGQGDTPDSMKSFWKYLLLRNIAKNWLEGVHYAVFGLG DSGYQKYNFVAKKLDRRISDLGATAVVERGLGDDQHPSGYEGALDPWMSSLWSMLYQINPKFFPNGPDFVISDTKLINQPKFQITYHEIDKVDLQSSSAP GLDHVQMQTGRARSMSPGKVSHIKNIPDCFLKMIKNQPLCRAGCGKDVRHFEFEFVSSIIEYGVGDVLEVLPGQDPAAVDAFLQCCNLNPESLITVHPIG MESRHRDAEGNDYKVPIKLKTFVELTMDIASASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYQYNQKERRTVLEVLEDFPSVQMPFEWLVQLVP PLKTRAFSISSSPSAHPNQVHLTVNVVSWTTPFKRKRTGLCSTWLAGLDPQDGMGVYIPAWFCKGSLPPPPPSIPLVLVGPGTGCAPFRGFVEERAIQDM SGSAAPIMLFFGCRNQENDFLYKDFWLSHAQNSGPLSIARGGGFYVAFSRDQPQKVYVQHKMREQSQRVWNLLVEGASIYVSGSSTKMPSDVMSALEEII SKEAGVSRETAVLQLRRLEKDGRYHVEAWS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02280			Flavodoxin family protein (.1)		Potri.004G101100 [exp]	0	1
AT2G11000		ATMAK10	MAK10 homologue (.1.2)		Potri.006G065000 [exp]	1.73	0.8255	Pt-ATMAK10.3
AT3G20650			mRNA capping enzyme family pro...		Potri.011G130100 [exp]	8.94	0.7899
AT2G37690			phosphoribosylaminoimidazole c...		Potri.013G043500 [exp]	9.21	0.8017	PURE.1
AT5G04920			EAP30/Vps36 family protein (.1...		Potri.010G246400 [exp]	10.24	0.7803
AT1G77250			RING/FYVE/PHD-type zinc finger...		Potri.002G076900 [exp]	12.36	0.7898
AT3G12940			2-oxoglutarate (2OG) and Fe(II...		Potri.011G143000 [exp]	12.48	0.7830
AT5G13480		FY	Transducin/WD40 repeat-like su...		Potri.001G026800 [exp]	13.92	0.8213
AT4G00500			alpha/beta-Hydrolases superfam...		Potri.014G083600 [exp]	18.57	0.7620
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Potri.003G086400 [exp]	19.89	0.8162
AT2G17510		EMB2763	EMBRYO DEFECTIVE 2763, ribonuc...		Potri.007G059100 [exp]	22.13	0.7932

Compare expression of checked genes

Potri.004G101100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.