Potri.004G101250 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G67140 2516 / 0 SWEETIE SWEETIE, HEAT repeat-containing protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017588 2558 / 0 AT1G67140 2372 / 0.0 SWEETIE, HEAT repeat-containing protein (.1.2.3)
Lus10033549 2438 / 0 AT1G67140 2254 / 0.0 SWEETIE, HEAT repeat-containing protein (.1.2.3)
PFAM info
Representative CDS sequence
>Potri.004G101250.2 pacid=42796339 polypeptide=Potri.004G101250.2.p locus=Potri.004G101250 ID=Potri.004G101250.2.v4.1 annot-version=v4.1
ATGTCAAAGAACTTCGTGAGAGAGAACGTGCCTCTCTCTCGATTCGGTGTTTTAGTCGCACAATTAGAATCCATAGGAGCCTCCGCTTCCCAACAATCCC
CTGACCCTCTCCTCTCTTTCGATCTCCTCTCCGATCTCCTCTCCGCCATCGATGAAGAGCCACGGGAATCTATTTTGTTATGGCAAAGAAAATGCGAGGA
TGCATTGTATTCATTGCTCAAGCTTGGCGCGCGGCGGCCAGTGCGGCATTTGGCATCAGTGGCAATGGCTAAGATCATATCTAGAGGGGATAGTATTTCG
ATATACTCCAGAGCGAGTAGTCTCCAAGGGTTTCTTTCTGATGCTAAGAGAAGCGAACCTCAAAGAGTTGCCGGTGCTGTGCGATGCTTGGGAGAATTAT
ATCAGCATTTCGGAAGAAAAATTACCTCAGGATTGCCTGAAACAACTATTATTGCCTCAAAACTTATGAAGTTTCATGAGGATTTTGTGAGACAAGAGGC
TCTACTGATGCTTGAAAAAGCTTTGGAAGGGTCTGGTGGTAGTGCTGCATCTACAGCATATACGGAGGCATTCCGTCTCATCACACGTTTTGCTATAGGA
GATAAATCATTTGTTGTTAGAATAGCTGGAGCTCGTTGTCTGAAGGTATTTGCTAGCATTGGTGGACCATGCCTAGGAGTTGGTGAAATTGAGAATTCAG
CTTCTTATTGTGTCAAGGCCCTTGAGGATCCTGTATCACTTGTCAGGGATGCATTTTCTGAAGCACTAGGCTCATTGCTAGCTCTTGGAATGAATCCAGA
GGCTCAGGTTCAACCCAGGGGAAAAGGTCCTTTTCCTCCAGCAAAAAAACTAGAAGGTGGTTTGCAGAGGCATTTGGCTTTGCCCTTCACAAAAGTGAGT
GGAACTCGGTTGAAGGATGTGCGAATTGGCATAACCTTATCTTGGGTTTACTTTTTACAGGCAATTCGTCTAAAATATCTACATCCAGATAGCGAGCTTC
AGCAGTATGCTTTGCAGGTTATGGAGATGCTTCGCTCAGATACTTCTGTTGATGCTCATGCACTGGCTTGCATTCTTTACGTCCTCAGAGTTGGTGTAAC
TGATCAGATGACTGAACCTACTCAAAGGGGCTTTTTAGTTTTCCTAGGAAAGCAGCTTGAGTCTTCTGATGCCACTCCTTCCATGAAAATTGCTGCTTTA
CGTACATTGTCATACACTTTGAAAACATTGGGCGAGGTTCCATTAGAATTCAAGGAACTCTTTGACAGCACAATTGTTGCTGCAGTATCTCATTCTTCTC
AACTTGTACGCATTGAGGCTGCCTTGGCATTGCGTGTTTTGGCTGAGGTCGATCCTACATGTGTTGGTGGTTTGATTTCTTATGTTGTGACCACACTAAG
TGCTTTGAGAGACAATATTTCATTTGAAAAGGGAAGCAATCTGAAAACTGAGCTTGATTCTTTGAATGGACAAGCTACTGTTTTGGCTGCTTTGGTTTCT
ATTTCACCCAAACTGCCTCTTGGCTATCCAGCCAGATTACCAAGATCAGTGCTGGAACTTTCAAAGAAAATGCTAACAGAATCTTCAAGAAATCCTATAG
CTGCAATAGTTGAGAAAGAAGCTGGATGGTTACTTTTGTCCTCGCTATTATCTTCAATGCCAAAGCAGGAGCTTGAAGACCAGGTTTTTGATATTCTTTT
GCTATGGGCTACCCTCTTTAGTGGAAATCCAGAACGAGAAATTCAAAAAATTGAAGATTTGGCTTCTACTATATGTGTGTGGTCTGCTGCTGTTGATGCA
CTGACAGCATTTGTAAGATGCTTTATTTCTCATAATGCAGCAAACAATGGGATTCTACTTCAACCAGTTATGGTATACTTGAGTAGTGCCCTGTCCTATA
TACTACTGCTACAACGTAAAGAACTGCCTAATATTAAGCCTGCAATAGACATATTCATCATCAGAACGTTAATGGCCTATCGGGCCCTCCCTGATTCAAT
GGCATATAAAAGTGACCATCCTCAGATTATCCAATTATGTACCATTCCATTCAGGGATGCTGCTAGATGTGAGGAAAGTTCATGCTTGAGGTTGCTGCTG
GACAAAAGAGATGCATGGTTGGGTCCTTGGATTCCTGGAAGGGATTGGTTTGAAGATGAAGTTCGTGCTTTTCAAGGTGGAAAAGATGGCCTTATGCCTT
GTGTATGGGACAATGAACCCTCAAGTTTTCCTCTGCCGGAAACAATAAACAAGATGTTGGTGAACCAGATGCTCCTTTGCTTCGGAATCATGTTTGCTTC
TCAAGATAATGGTGGGATGTTGTTGCTTCTTGGAATGGTTGAGCAATGTCTAAAAGCTGGAAAAAAGCAATCATGGCATGAAGCCAGTGTTACCAATATA
TGTGTTGGGTTACTCGCAGGATTGAAGGCTTTGATTGCTTTACGTCCCCAACCTTTGGGACCTGAGATATTGAATGGAGCTCAGGCAATTTTTCAGAGTA
TTCTGGCAGAGGGAGACATCTGTGCATCCCAACGTAGAGCATCGTCAGAAGGTCTTGGTCTATTAGCTCGCCTGGGAAATGATATCTTTACAGCCAAAAT
GACTAGGTTGCTTCTTGGTGACCTTCCCGGTGCAACAGATTTCAACTATGCTGGCTCAATTGCCTTTGCACTTGGCTGCATTCATCGCAGTGCTGGAGGA
ATGGCATTGTCAAGTTTAGTGCCTCAAACTGTGAGCTCAATATCTTTGCTAGCTAAAAGTACGATTACTGGGTTACAGATCTGGTCGTTGTATGGTCTTC
TTTTGACTATTGAAGCTTCTGGTTTTTCATATGTATCTCATGTTCAGGCAACACTTGGGCTTGCTTTGGACATTCTTCTGTCTGAGGAGAATGGGTTGGT
TGACTTTCAGCAAGGAGTGGGCCGCCTTATAAATGCTATTGTTGCTGTTCTTGGTCCTGAACTTGCCCCTGGAAGCATTTTCTTTTCACGCTGCAAGTCT
GTCATTGCAGAGATAAGCTCCTGGCAAGAAACGGCCACATTGCTAGAGAGTGTTCGTTTTACACAGCAACTTGTCCTTTTTGCTCCGCAAGCTGTTTCCG
TGCACACTCATGTGCAAACGCTTCTCTCAACTCTGTCATCAGGACAGCCAACTTTAAGGCATCTTGCTGTCTCCACCCTCCGGCATCTCATTGAAAAGGA
TCCAGTTTCTATCAGTGATGAGCAAATAGAAGATAACTTGTTTCACATGCTGAACGAGGAAACTGATTCTGTGATTGGGAGTCTGGTACAGGCCACAATT
ATGCGATTGCTCCTTGCTTCATGCCCTTCATGTCCATCTCACTGGATATTGATTTGTCGTAATATGGTACTCGCTACATTGGGAAGGCAAGATACTGATA
CCAATAGGAGTGCTGGAAATGATCCTCTAAATGGTCCAGACAACGACTCAGGAATGGACCTCGGGGAAGATGATGAAAACATGGTTAGTAGCTCTAAAGG
CATGCCGGTGCAAGGTTATGCTTTTGGAGCTCACAGGATCAATCATAATAGAGATAAACACCTCAGATACCGAACTAGAGTTTTTGCTGCCGAGTGTTTG
AGTCATCTGCCTATAGCTGTTGGTAAGAATCCTGCTCATTTTGATCTCTCTTTGGCGAGGAAACAATCTACTAATGGGGAACTCTCGCGAGACTGGCTAG
TTCTCCATGTTCAAGAGTTAATTTCACTGGCTTATCAGATTAGCACAATACAGTTTGAAAACATGCGGCCAATTGGTGTGAGACTCCTAACTGCAATTCT
TGACAAGTTTGAAAAATCCCCAGACCCAGAGCTTCCTGGACATCTTCTACTGGAACAATACCAGGCCCAACTAGTATCTGCTGTTCGCACAGCATTGGAT
GCATCTTCTGGTCCTATTCTTCTCGAGGCAGGACTTCAGCTGGCCACTAAGATAATGACCAGTGGAGTACTGGGTGGTGATCAAGTTGCAGTTAAACGCA
TGTTTTCATTAATTTCTAGGCCACTGAATGACTTCAAGGATGTTTATTATCCTTCATTCGCAGAGTGGGTCTCATGCAAGATCAAGATAAGACTTCTGGC
TGCTCATGCCTCTCTCAAATGTTACACTTTCTCATTTTTGAGGAGACACCATAGTGGAGTTCCAGACGAGTATCTAGCATTGTTACCATTGTTTTCTAAG
AGTTCAAATATTCTGGGGAAGTACTGGATTGGGGTTCTGAAGGATTACAGTTATATTTGCTTATGCCTGGATGCCAAGAAAAATTGGAATCCATTCCTTG
ATGGAATTCAATCACCTATCGTTTCATCAAAAGTGCAGCTCAGTTTAGAGGAATCCTGGCCAGTGATTCTGCAAGCACTTGCATTAGATGCAATTCCTGC
AAATACCCATGGGAATTCAAAGGAAACAGATGAAAATACATCAAATAATAGTTTAATATCTGGATATAGCATGGTTGAACTCAAGTTGGAAGATTATCGA
TTTCTATGGGGGTTTTCCCTGCTTGTTCTATTTCAGCGACAACATCCAACTCTTACTAGACGAATAATATTACTAAGTTCTGCTGAAGTAAGATACGGTG
GAGATTCGCCAACTGAAGAGACAAATACTGCAGCTTTGAAGCAATATGAGATTGTTCTGCCAGTTTTCCAGTTTCTCTTGACAGAAAGATTTTTCACTGA
AGAATTTATTACTCTGGATATTTGCCGAGAATTGCTGCAGGTTTTCTTCTACTCTATTTACATGGATAATTCTTGGAATACTCTTTCAATATCAGTTCTA
TCACAGATTGTGCAGAATTGTCCCGCAGATTTTCTTGAAGCAGAAGCTTTAGGTTATCTGGTCGTGGAACTTCTCTTGGCTTATATCTTCAATGTTTTTC
AGAGAACCTATGAGGTCCTATCAGATCACTCAAACTGTGAGGAGTTGATATCTCCATTGTTTATTACAGCAAAGACACTTGTGAAGCGTTGCGAACCAAA
GAAGCAATTAAAGTCTGTGGTCGTGGCCTTAGTGTTGGTTGGTTACAAGTGTATCAGAGAAGCTTTGACAGAGTTAAGCTTTTCAACAGTTAATGACTTT
GTAAAGTGCGTGATTCCCTTGATGAAGAAACTTGTTGATGACTCTGCTGAACATGGTAATAATAGCAGTCATCTGAGGGCAATCCTGGGAACTTGTCTGA
ATGTGATTGCTGATTTGATTAAGGATTGCATCAAGGGCATTCACCTTCTGGAGAACAAAAGATCTGACTTACTCAAGTTACTGCAATTGAAGCTTTCTTT
CTCTATTGAGCAAATGATGTTATTTGCCAAGCTAGTTTATGAAAGTGTATATGGCAGACAAGCTGAAGACAGCAATACTATTTGTCTTGCTGTGCTCAAG
TATTGCAGCAAATACATCCAGACTGTGCTGAAAGATTCAAATGTACAGGTTCAAGCAATTGGATTGCAAGTGCTCAAAACCATGACTCAGAGAAGCACCA
ACATAGAAGACAGTTCTTTCTTCATATTTTTTAGTGGAGAGCTTGTTACAGAAATTTTCCACATAATCCACACCTCGTTGAAGAAACCAGTAAGTAAAGA
ATCTGTGTCTATTGCTGGTGAGTGCTTGAGATTTCTAGTGCTTCTACAAACACTTTCAAAAGCAAATGAATGTCAGAGAGGCTTCATGAATCTGCTTCTC
AAAGCCATTGTCATGATATTCTCAGCATCAGAAGATGATTCCTCTCAGGAAGTCAGTGATATAAGAACCAATGCTGTAAGGCTTGTTTCTTCTCTTGCTC
AAATTCCTTCATCGGCAGTCCACTTTAAGGATGTCTTGTTATCAATGCCCGTGTCACATAAACAACAACTTCAGGGGGTAATCCGTGCTTCTGTGGCACA
GCATCAAAATGCATCACCAATGAAAACTGTGGCATCATTAGAAATAAAATTACCAGTGCCAAAAGATTCCCAAACATCATCCACATCAACACTGCCAATA
GAAGGAAGTAGACAGAAAAGTTCTACCCCATCATCCCCTGTTCACTTTGACCAGGTCACAATGGAAGATGACCAAGAGGACGAAGATGACTGGGATGCTT
TCCAGTCTTTCCCTGCTTCAACTGATGCAGCTGGTACTGTTTCAAAAGCAGAAAGTGCTGCACAAGAACCAGACCTGGTTGAGAAATCTATTTCAGAAAG
TGAGTTTCAAGACTTTTCTACATCCAAACCCGTCAACAATGAAGGTGACATGAGCAGTGCTGAGCATCAAGAAGTGATTTCTAATGACCTAGGACATAAT
ATCAAACCCGAACCCTATAATGATCAATATCATAATAGAGAAGAGGAGGGAGTGGCATTGAACCAAGAAAATGTAAAAATATCAACTGATCTTCAACTTA
TCGACGAAGCACCGAGCCACAAGGATGAAGAGGGAGCAGTGTCTAGCCAAGAGAATATCGAAACCTCACCTGATCTTAAAGTTATTGAGGATACAGAAGG
GTCGATTCAAGTGAATATAGTGGAAGATTATGAGCAGACAATGCATAGCCTACGTAACAGTATTGATCATCAGAGTCAAGTATCACCAGATGATCTTCAA
CCTGTTGAAGTTAAAGAACAGGTCGAAGCAAATATAGTGCAGGACCATGACCAGCTCAAGGTTCCTCCAGATCAGCAAAATGTTGTTCCATGA
AA sequence
>Potri.004G101250.2 pacid=42796339 polypeptide=Potri.004G101250.2.p locus=Potri.004G101250 ID=Potri.004G101250.2.v4.1 annot-version=v4.1
MSKNFVRENVPLSRFGVLVAQLESIGASASQQSPDPLLSFDLLSDLLSAIDEEPRESILLWQRKCEDALYSLLKLGARRPVRHLASVAMAKIISRGDSIS
IYSRASSLQGFLSDAKRSEPQRVAGAVRCLGELYQHFGRKITSGLPETTIIASKLMKFHEDFVRQEALLMLEKALEGSGGSAASTAYTEAFRLITRFAIG
DKSFVVRIAGARCLKVFASIGGPCLGVGEIENSASYCVKALEDPVSLVRDAFSEALGSLLALGMNPEAQVQPRGKGPFPPAKKLEGGLQRHLALPFTKVS
GTRLKDVRIGITLSWVYFLQAIRLKYLHPDSELQQYALQVMEMLRSDTSVDAHALACILYVLRVGVTDQMTEPTQRGFLVFLGKQLESSDATPSMKIAAL
RTLSYTLKTLGEVPLEFKELFDSTIVAAVSHSSQLVRIEAALALRVLAEVDPTCVGGLISYVVTTLSALRDNISFEKGSNLKTELDSLNGQATVLAALVS
ISPKLPLGYPARLPRSVLELSKKMLTESSRNPIAAIVEKEAGWLLLSSLLSSMPKQELEDQVFDILLLWATLFSGNPEREIQKIEDLASTICVWSAAVDA
LTAFVRCFISHNAANNGILLQPVMVYLSSALSYILLLQRKELPNIKPAIDIFIIRTLMAYRALPDSMAYKSDHPQIIQLCTIPFRDAARCEESSCLRLLL
DKRDAWLGPWIPGRDWFEDEVRAFQGGKDGLMPCVWDNEPSSFPLPETINKMLVNQMLLCFGIMFASQDNGGMLLLLGMVEQCLKAGKKQSWHEASVTNI
CVGLLAGLKALIALRPQPLGPEILNGAQAIFQSILAEGDICASQRRASSEGLGLLARLGNDIFTAKMTRLLLGDLPGATDFNYAGSIAFALGCIHRSAGG
MALSSLVPQTVSSISLLAKSTITGLQIWSLYGLLLTIEASGFSYVSHVQATLGLALDILLSEENGLVDFQQGVGRLINAIVAVLGPELAPGSIFFSRCKS
VIAEISSWQETATLLESVRFTQQLVLFAPQAVSVHTHVQTLLSTLSSGQPTLRHLAVSTLRHLIEKDPVSISDEQIEDNLFHMLNEETDSVIGSLVQATI
MRLLLASCPSCPSHWILICRNMVLATLGRQDTDTNRSAGNDPLNGPDNDSGMDLGEDDENMVSSSKGMPVQGYAFGAHRINHNRDKHLRYRTRVFAAECL
SHLPIAVGKNPAHFDLSLARKQSTNGELSRDWLVLHVQELISLAYQISTIQFENMRPIGVRLLTAILDKFEKSPDPELPGHLLLEQYQAQLVSAVRTALD
ASSGPILLEAGLQLATKIMTSGVLGGDQVAVKRMFSLISRPLNDFKDVYYPSFAEWVSCKIKIRLLAAHASLKCYTFSFLRRHHSGVPDEYLALLPLFSK
SSNILGKYWIGVLKDYSYICLCLDAKKNWNPFLDGIQSPIVSSKVQLSLEESWPVILQALALDAIPANTHGNSKETDENTSNNSLISGYSMVELKLEDYR
FLWGFSLLVLFQRQHPTLTRRIILLSSAEVRYGGDSPTEETNTAALKQYEIVLPVFQFLLTERFFTEEFITLDICRELLQVFFYSIYMDNSWNTLSISVL
SQIVQNCPADFLEAEALGYLVVELLLAYIFNVFQRTYEVLSDHSNCEELISPLFITAKTLVKRCEPKKQLKSVVVALVLVGYKCIREALTELSFSTVNDF
VKCVIPLMKKLVDDSAEHGNNSSHLRAILGTCLNVIADLIKDCIKGIHLLENKRSDLLKLLQLKLSFSIEQMMLFAKLVYESVYGRQAEDSNTICLAVLK
YCSKYIQTVLKDSNVQVQAIGLQVLKTMTQRSTNIEDSSFFIFFSGELVTEIFHIIHTSLKKPVSKESVSIAGECLRFLVLLQTLSKANECQRGFMNLLL
KAIVMIFSASEDDSSQEVSDIRTNAVRLVSSLAQIPSSAVHFKDVLLSMPVSHKQQLQGVIRASVAQHQNASPMKTVASLEIKLPVPKDSQTSSTSTLPI
EGSRQKSSTPSSPVHFDQVTMEDDQEDEDDWDAFQSFPASTDAAGTVSKAESAAQEPDLVEKSISESEFQDFSTSKPVNNEGDMSSAEHQEVISNDLGHN
IKPEPYNDQYHNREEEGVALNQENVKISTDLQLIDEAPSHKDEEGAVSSQENIETSPDLKVIEDTEGSIQVNIVEDYEQTMHSLRNSIDHQSQVSPDDLQ
PVEVKEQVEANIVQDHDQLKVPPDQQNVVP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G67140 SWEETIE SWEETIE, HEAT repeat-containin... Potri.004G101250 0 1
AT5G07740 actin binding (.1) Potri.012G067900 1.41 0.8311
AT1G21170 SEC5B Exocyst complex component SEC5... Potri.005G191500 1.41 0.8426 SEC5.1
AT5G07740 actin binding (.1) Potri.015G061001 4.47 0.8107
AT5G06600 AtUBP12, UBP12 ubiquitin-specific protease 12... Potri.010G245100 4.89 0.7857 NTN2.2
AT2G46560 transducin family protein / WD... Potri.002G173300 4.89 0.8246
AT2G39090 APC7, AtAPC7 anaphase-promoting complex 7, ... Potri.010G022100 5.09 0.7569
AT5G23630 PDR2, MIA PI DEFICIENCY RESPONSE 2, MALE... Potri.004G137100 5.65 0.8125
AT5G04560 DME1, DME DEMETER, HhH-GPD base excision... Potri.008G025900 6.92 0.7597
AT1G08600 ATRX, CHR20 P-loop containing nucleoside t... Potri.019G021500 7.00 0.8075
AT5G66030 ATGRIP, GRIP Golgi-localized GRIP domain-co... Potri.005G099800 7.21 0.7840

Potri.004G101250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.