Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16080 357 / 7e-123 ATCXE17 carboxyesterase 17 (.1) AT1G68620 315 / 1e-106 alpha/beta-Hydrolases superfamily protein (.1) AT5G62180 177 / 5e-53 ATCXE20 carboxyesterase 20 (.1) AT5G27320 174 / 1e-51 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT5G23530 166 / 2e-48 ATCXE18 carboxyesterase 18 (.1) AT5G06570 165 / 3e-48 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G48700 163 / 2e-47 ATCXE13 carboxyesterase 13 (.1) AT2G45600 162 / 5e-47 alpha/beta-Hydrolases superfamily protein (.1) AT3G63010 160 / 6e-46 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT2G45610 158 / 1e-45 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G113700 [exp] 597 / 0 AT5G16080 358 / 3e-123 carboxyesterase 17 (.1) Potri.010G127600 [exp] 424 / 3e-149 AT5G16080 346 / 2e-118 carboxyesterase 17 (.1) Potri.008G118400 [exp] 412 / 1e-144 AT1G68620 345 / 4e-118 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G155800 [exp] 207 / 1e-64 AT5G06570 310 / 4e-105 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.018G028300 [exp] 201 / 3e-62 AT1G68620 199 / 1e-61 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G032400 [exp] 201 / 7e-62 AT1G68620 185 / 9e-56 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G198800 [exp] 198 / 5e-61 AT5G06570 373 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G192650 [exp] 194 / 3e-59 AT5G16080 182 / 1e-54 carboxyesterase 17 (.1) Potri.016G065000 [exp] 193 / 4e-59 AT5G06570 376 / 7e-131 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017587 [exp] 394 / 2e-137 AT5G16080 329 / 5e-112 carboxyesterase 17 (.1) Lus10033548 [exp] 387 / 1e-134 AT5G16080 330 / 3e-112 carboxyesterase 17 (.1) Lus10041473 [exp] 263 / 8e-86 AT1G68620 248 / 5e-80 alpha/beta-Hydrolases superfamily protein (.1) Lus10002019 [exp] 224 / 5e-71 AT5G16080 218 / 1e-68 carboxyesterase 17 (.1) Lus10002907 [exp] 217 / 2e-68 AT5G16080 204 / 3e-63 carboxyesterase 17 (.1) Lus10036168 [exp] 208 / 6e-65 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10015989 [exp] 200 / 1e-61 AT5G06570 337 / 1e-115 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10015988 [exp] 195 / 8e-60 AT5G06570 346 / 5e-119 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10008439 [exp] 194 / 1e-59 AT5G06570 281 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10024087 [exp] 195 / 2e-59 AT5G16080 187 / 1e-56 carboxyesterase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.004G101400.1 pacid=42794819 polypeptide=Potri.004G101400.1.p locus=Potri.004G101400 ID=Potri.004G101400.1.v4.1 annot-version=v4.1 ATGAGAAGAAAAAAAATGGCTGCCATCTCCTTCGATCCAAGAATTAATCGTCAAACGAGCAAGAACTCCCATGGAGTAATCATTGAAGAAATCGAAGGAC TCATCAGAGTTTACAAAGATGGACACATCGAAAGGCCTCCTATCATTCCCAATGTTCCTTGCAACGTGGCGACAGTAAATGATGTGACAGCAAAAGATGT TGTTATCGACAAGTTCACTAACTTGTGGGCTCGCATTTATGTCTCAAACCGCTCAGGCACGCTGCCTTTGCTTGTTTACTTCCATGGAGGCGGATTTTGT GTTGGCTCAGCTGCTTGGAGTGGTTACCATGAGTTCTTGGCCAATCTTGCTTCTAAAGCAAGTTGCATTATTTTATCCATAAACTACCGGCTGGCCCCCG AAAATCGTCTCCCTACTGCTTATGATGACGGCATCGACGCCTTTACATGGGTAAAACAACAGGCTCTAAATGGTTCTCTTGAGCATAAGTGGTGGTTAAG TCGGTGCAATTTCTCTAGCATGTTCCTAGCTGGTGACAGTGCTGGTGCAAACATAGCTTACAACGTGGCCACAAGGCTAGAATCCAGATACAATCCTGAG TCCATGACAAAGCCTTCGTGTTTCAAGGGTATCATCTTGATCCAACCTTTCTTTGGAGGAGAGGCACGAACTTTGTCTGAGAAAAATATGACTCAACCAG CTAACTCAGCACTGACTCTGTCGGCTTCTGACACATATTGGCGGTTATCACTGCCTCTAGGATCTAACCGTGATCATCCATACTGCAACCCTTTAGCAAA TGGTGCCAGCAAGTTGCGTGACCTACGACTTCCAACTATAATGGTTGGCATATCTGAGTTGGATATACTTAAGGACAGAAACTCGGAATTTTGTTCGGCC TTGACTAGAGCTGGTAAGAGAGTTGAAACAGTGACGTACAAAGGAGTTGGGCATGCATTTCAAATTCTACATAATTCTCATCTCTCTCATACCCGCGTTC AAGAGATGGCATCCCATATCAAGACTTTCATCAACCAATGA
AA sequence Show only first row Show all	>Potri.004G101400.1 pacid=42794819 polypeptide=Potri.004G101400.1.p locus=Potri.004G101400 ID=Potri.004G101400.1.v4.1 annot-version=v4.1 MRRKKMAAISFDPRINRQTSKNSHGVIIEEIEGLIRVYKDGHIERPPIIPNVPCNVATVNDVTAKDVVIDKFTNLWARIYVSNRSGTLPLLVYFHGGGFC VGSAAWSGYHEFLANLASKASCIILSINYRLAPENRLPTAYDDGIDAFTWVKQQALNGSLEHKWWLSRCNFSSMFLAGDSAGANIAYNVATRLESRYNPE SMTKPSCFKGIILIQPFFGGEARTLSEKNMTQPANSALTLSASDTYWRLSLPLGSNRDHPYCNPLANGASKLRDLRLPTIMVGISELDILKDRNSEFCSA LTRAGKRVETVTYKGVGHAFQILHNSHLSHTRVQEMASHIKTFINQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Potri.004G101400 [exp]	0	1
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Potri.017G141400 [exp]	1.41	0.9480
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Potri.003G204000 [exp]	6.48	0.9413
AT4G05030			Copper transport protein famil...		Potri.001G468500 [exp]	7.07	0.9160
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.018G145516 [exp]	7.74	0.9245
AT1G74170		AtRLP13	receptor like protein 13 (.1)		Potri.018G144800 [exp]	16.24	0.9061
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Potri.017G141300 [exp]	16.73	0.8691
AT3G14840			Leucine-rich repeat transmembr...		Potri.019G008900 [exp]	18.02	0.8848
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Potri.015G040700 [exp]	20.19	0.9124
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025200 [exp]	22.73	0.9039
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.001G065309 [exp]	24.00	0.8915

Compare expression of checked genes

Potri.004G101400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.