Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02530 968 / 0 TCP-1/cpn60 chaperonin family protein (.1) AT5G16070 954 / 0 TCP-1/cpn60 chaperonin family protein (.1) AT1G24510 214 / 1e-62 TCP-1/cpn60 chaperonin family protein (.1.2) AT5G26360 184 / 3e-51 TCP-1/cpn60 chaperonin family protein (.1) AT5G20890 179 / 7e-50 TCP-1/cpn60 chaperonin family protein (.1) AT3G18190 174 / 1e-47 TCP-1/cpn60 chaperonin family protein (.1) AT3G20050 172 / 4e-47 ATTCP-1 T-complex protein 1 alpha subunit (.1) AT3G11830 160 / 1e-42 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G03960 132 / 4e-33 TCP-1/cpn60 chaperonin family protein (.1) AT5G56500 55 / 8e-08 Cpn60beta3 chaperonin-60beta3, TCP-1/cpn60 chaperonin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G113601 [exp] 1020 / 0 AT3G02530 972 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.010G051700 [exp] 200 / 3e-57 AT1G24510 989 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.008G182300 [exp] 197 / 3e-56 AT1G24510 1014 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.006G128600 [exp] 194 / 2e-55 AT5G20890 904 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.001G341100 [exp] 189 / 1e-53 AT5G20890 944 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.004G133800 [exp] 181 / 2e-50 AT5G26360 1028 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.T046300 [exp] 181 / 2e-50 AT5G26360 1030 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.018G138200 [exp] 181 / 4e-50 AT5G26360 1029 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.004G195300 [exp] 175 / 4e-48 AT3G11830 985 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017585 [exp] 1016 / 0 AT3G02530 1007 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10033546 [exp] 1014 / 0 AT3G02530 1008 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10006457 [exp] 204 / 9e-59 AT1G24510 1009 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10011401 [exp] 203 / 1e-58 AT1G24510 1012 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10036947 [exp] 198 / 1e-56 AT1G24510 1004 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10014511 [exp] 190 / 7e-54 AT5G20890 916 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10032176 [exp] 189 / 1e-53 AT5G20890 949 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10012380 [exp] 189 / 2e-53 AT5G20890 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10021150 [exp] 182 / 8e-51 AT5G26360 1046 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10017853 [exp] 181 / 3e-50 AT5G26360 1041 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [poplar] [flax] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Potri.004G101500.1 pacid=42794740 polypeptide=Potri.004G101500.1.p locus=Potri.004G101500 ID=Potri.004G101500.1.v4.1 annot-version=v4.1 ATGTCGCTAAGAGTATTAAACCCTAATGCGGAGGTTCTCAACAAATCGGCGGCGCTTCACATGAACATCAATGCCGCTAAAGGCTTACAAGATGTTCTCA AATCCAATCTCGGCCCCAAAGGCACCATCAAGATGCTTGTTGGTGGTGCTGGAGATATAAAACTCACAAAAGATGGAAACACTCTTTTGAAAGAAATGCA AATTCAAAGCCCTACTGCGATTATGATTGCAAGGACAGCTGTTGCCCAAGATGATATAAGTGGAGATGGTACGACATCTACTGTGATCTTTATTGGAGAG CTTATGAAGCAATCTGAACGGTACATTGATGAAGGGATGCATCCACGTGTCTTGGTTGATGGTTTTGAGATTGCCAAAAGAGCTACTCTCCAGTTTCTTG AAAAATTTAAGACACCAGTGGTGATGGGTGATGAACCCGACAGGGAAATTCTAAAAATGGTTGCAAGAACAACAATAAGGACAAAGCTATATGAAGCTTT GGCTGATCAATTAACTGACATAGTTGTTAATTCGGTGCTCTGTATTCGAAAGCCTGAGGAAGCCATTGATCTATTTATGGTGGAGATTATGCACATGCGT CATAAATTTGATGTTGACACAAGGCTTGTTGAAGGTCTTGTTCTTGACCATGGTTCCAGGCATCCTGATATGAAAAGACGGGCAGAAAACTGTTTTATCT TGACATGCAACGTCTCTTTGGAATACGAGAAAAGTGAAATAAATGCAGGATTTTTCTACTCAAATGCAGAGCAGAGGGAGGCAATGGTTGCGGCTGAAAG GCGCCAGGTCGATGAAAGAGTTAGAAAAATTATTGAACTAAAAGATAAGGTTTGTTCTGGTACAGACAACAATTTTGTGGTTATTAATCAAAAGGGAATT GATCCTCCATCATTGGACCTTCTTGCACGAGCAGGGATAATTGCCCTTCGAAGAGCAAAGAGGAGAAATATGGAACGCCTGGTTTTAGCATGTGGAGGAG AGGCTTTGAATTCTGTTGATAGTTTAACTCCTGATTGCCTTGGTTGGGCTGGACTGGTTTATGAGCATGTCCTTGGTGAAGAGAAGTATACATTTGTTGA AAATGTTAAAAACCCCCATTCTTGCACTATCTTAATAAAAGGACCTAATGACCATACAATTGCCCAAATAAAGGATGCTGTCCGTGATGGCTTGAGAGCA GTCAAAAATACTATTGAAGATGAAGCTGTGGTACTTGGAGCAGGAGCTTTTGAACTTGCAGCCAGAAAACACCTGATCAATGAAGTAAAGAAAACAGTTA AAGGGCGTGCTCAGCTAGGTGTTGAAGCTTTTGCTGATGCCCTTCTCGTGGTGCCCAAAACTCTGGCTGAGAATTCTGGGTTAGACACTCAAGATGAGAT TGTTGCTCTCACGGGAGAGCACGACAGGGATAACATTGTAGGAATAAACCTCCAAACAGGTGGGCCCCTCGATCCTCAGGTGGAGGGTATCTTTGACAAC TACTCTGTCAAGCGCCAACTCATAAACTCAGGGCCTGTGATCACATCACAATTGCTACTGGTGGATGAAGTCATTCGCGCTGGGCGTAATATGAGGAAGC CAAATTAG
AA sequence Show only first row Show all	>Potri.004G101500.1 pacid=42794740 polypeptide=Potri.004G101500.1.p locus=Potri.004G101500 ID=Potri.004G101500.1.v4.1 annot-version=v4.1 MSLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKSNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQSPTAIMIARTAVAQDDISGDGTTSTVIFIGE LMKQSERYIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDREILKMVARTTIRTKLYEALADQLTDIVVNSVLCIRKPEEAIDLFMVEIMHMR HKFDVDTRLVEGLVLDHGSRHPDMKRRAENCFILTCNVSLEYEKSEINAGFFYSNAEQREAMVAAERRQVDERVRKIIELKDKVCSGTDNNFVVINQKGI DPPSLDLLARAGIIALRRAKRRNMERLVLACGGEALNSVDSLTPDCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRA VKNTIEDEAVVLGAGAFELAARKHLINEVKKTVKGRAQLGVEAFADALLVVPKTLAENSGLDTQDEIVALTGEHDRDNIVGINLQTGGPLDPQVEGIFDN YSVKRQLINSGPVITSQLLLVDEVIRAGRNMRKPN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02530			TCP-1/cpn60 chaperonin family ...		Potri.004G101500 [exp]	0	1
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Potri.007G070000 [exp]	3.16	0.8591
AT4G28510		ATPHB1	prohibitin 1 (.1)		Potri.007G134700 [exp]	4.24	0.8831	PHB1.1
AT5G40770		ATPHB3	prohibitin 3 (.1)		Potri.017G065800 [exp]	6.63	0.8682	PHB3.1
AT4G16720			Ribosomal protein L23/L15e fam...		Potri.003G078700 [exp]	8.00	0.8643	Pt-RPL15.4
AT3G51010			unknown protein		Potri.007G018300 [exp]	9.16	0.8127
AT4G11630			Ribosomal protein L19 family p...		Potri.012G086800 [exp]	12.12	0.8691
AT5G42150			Glutathione S-transferase fami...		Potri.015G038300 [exp]	13.41	0.8518
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Potri.006G190600 [exp]	14.00	0.8245
AT3G18190			TCP-1/cpn60 chaperonin family ...		Potri.015G042600 [exp]	14.83	0.8061
AT3G20000		TOM40	translocase of the outer mitoc...		Potri.007G000200 [exp]	15.96	0.8679	Pt-TOM40.1

Compare expression of checked genes

Potri.004G101500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.