Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02520 471 / 1e-170 GENERALREGULATORYFACTOR7, GF14NU, GRF7 general regulatory factor 7 (.1) AT5G38480 464 / 1e-167 RCI1, GRF3 general regulatory factor 3 (.1.2) AT1G78300 442 / 4e-159 14-3-3OMEGA, GF14OMEGA, GRF2 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) AT5G16050 440 / 3e-158 GF14UPSILON, GRF5 general regulatory factor 5 (.1) AT4G09000 436 / 2e-156 GF14CHI, GRF1 GENERAL REGULATORY FACTOR1-G-BOX FACTOR 14-3-3 HOMOLOG ISOFORM CHI, general regulatory factor 1 (.1.2) AT1G35160 434 / 5e-156 14-3-3PHI, GF14PHI, GRF4 ,GF14 PHI GENERAL REGULATORY FACTOR 4, 14-3-3 PROTEIN G-BOX FACTOR14 PHI, GF14 protein phi chain (.1.2) AT5G10450 397 / 1e-141 14-3-3lambda, AFT1, GF14LAMBDA, GRF6 14-3-3 PROTEIN G-BOX FACTOR14 LAMBDA, G-box regulating factor 6 (.1.2.3.4) AT5G65430 395 / 6e-141 14-3-3KAPPA, GF14KAPPA, GRF8 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) AT1G26480 362 / 2e-127 GF14IOTA, GRF12 general regulatory factor 12 (.1) AT1G34760 347 / 7e-122 RHS5, GF14OMICRON, GRF11 ROOT HAIR SPECIFIC 5, general regulatory factor 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G113300 [exp] 505 / 0 AT3G02520 468 / 2e-169 general regulatory factor 7 (.1) Potri.005G162400 [exp] 453 / 1e-163 AT1G78300 475 / 2e-172 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Potri.002G099800 [exp] 446 / 7e-161 AT1G78300 473 / 3e-171 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Potri.005G157700 [exp] 386 / 3e-137 AT5G65430 427 / 1e-153 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) Potri.002G103800 [exp] 378 / 9e-134 AT5G65430 429 / 4e-154 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) Potri.001G392200 [exp] 366 / 6e-129 AT2G42590 428 / 2e-153 general regulatory factor 9 (.1.2.3) Potri.011G110900 [exp] 364 / 2e-128 AT2G42590 424 / 4e-152 general regulatory factor 9 (.1.2.3) Potri.008G095000 [exp] 363 / 4e-128 AT1G26480 440 / 3e-158 general regulatory factor 12 (.1) Potri.010G159300 [exp] 362 / 1e-127 AT1G26480 466 / 2e-168 general regulatory factor 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033545 [exp] 496 / 2e-180 AT3G02520 470 / 4e-170 general regulatory factor 7 (.1) Lus10017584 [exp] 493 / 5e-179 AT3G02520 471 / 1e-170 general regulatory factor 7 (.1) Lus10036481 [exp] 448 / 2e-161 AT1G78300 481 / 1e-174 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Lus10020940 [exp] 442 / 6e-159 AT1G78300 483 / 2e-175 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Lus10008715 [exp] 431 / 4e-154 AT1G78300 459 / 2e-165 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Lus10010349 [exp] 421 / 8e-151 AT1G78300 454 / 5e-164 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Lus10035934 [exp] 389 / 3e-138 AT5G65430 450 / 1e-162 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) Lus10025727 [exp] 385 / 1e-136 AT5G65430 454 / 3e-164 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) Lus10040534 [exp] 378 / 4e-133 AT5G65430 439 / 1e-157 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) Lus10014899 [exp] 373 / 2e-131 AT5G65430 438 / 2e-157 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00244 [poplar] [flax] 14-3-3 14-3-3 protein
Representative CDS sequence Show only first row Show all	>Potri.004G101700.2 pacid=42796695 polypeptide=Potri.004G101700.2.p locus=Potri.004G101700 ID=Potri.004G101700.2.v4.1 annot-version=v4.1 ATGTCGCCAACTGAATCATCACGTGAAGAGCATGTTTACATGGCCAAGTTGGCCGAACAGGCTGAACGTTATGAAGAAATGGTGGAGTTTATGGAGAAAG TTGCAAAGACAGTTGATTCGGAGGAGCTAACTGTGGAGGAAAGGAACTTGCTCTCCGTAGCCTACAAAAATGTCATTGGAGCTAGGAGGGCTTCTTGGAG GATCATATCTTCCATTGAGCAGAAGGAAGAGAGCAGAGGAAATGAAGATCATGTCACAATCATCAAGGAGTACAGGGGCAAAATTGAAGCTGAGCTCAGC AAGATCTGTGACGGAATCTTGAACCTCCTTGAGTCGCATCTTGTTCCCTCTGCCTCATCTGCTGAGTCCAAGGTATTTTACCTCAAGATGAAGGGTGATT ACCATAGGTATCTTGCTGAGTTCAAGACGGGGGCTGAGAGGAAGGAAGCTGCTGAGAGCACTTTGTTGGCTTACAAGTCTGCTCAGGATATTGCACTTAC TGAACTGGCTCCTACTCACCCAATAAGGCTTGGGCTTGCTCTTAACTTCTCTGTCTTCTACTATGAGATCCTTAACTCTCCTGATCGTGCTTGCAATCTT GCCAAGCAGGCTTTTGACGAGGCTATTTCTGAGCTGGATACATTGGGTGAGGAGTCTTACAAGGACAGCACATTGATCATGCAACTTCTCCGAGATAATC TGACACTCTGGACCTCTGATATCACGGATGATGCGGACGAGATCAAGGAAGCATCAAAACGTGAATCCGGCGAGGGGCCGCAGTGA
AA sequence Show only first row Show all	>Potri.004G101700.2 pacid=42796695 polypeptide=Potri.004G101700.2.p locus=Potri.004G101700 ID=Potri.004G101700.2.v4.1 annot-version=v4.1 MSPTESSREEHVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVTIIKEYRGKIEAELS KICDGILNLLESHLVPSASSAESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLLAYKSAQDIALTELAPTHPIRLGLALNFSVFYYEILNSPDRACNL AKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDITDDADEIKEASKRESGEGPQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02520		GENERALREGULATO...	general regulatory factor 7 (....		Potri.004G101700 [exp]	0	1
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Potri.004G153400 [exp]	1.00	0.7966	Pt-ACT2.2
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Potri.012G117800 [exp]	2.44	0.7318	ARA7.1
AT1G27000			Protein of unknown function (D...		Potri.010G092700 [exp]	3.46	0.7396
AT3G02520		GENERALREGULATO...	general regulatory factor 7 (....		Potri.017G113300 [exp]	4.47	0.6634	GF14.5
AT4G09830			Uncharacterised conserved prot...		Potri.002G064800 [exp]	4.47	0.7181
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Potri.010G198000 [exp]	7.00	0.7023
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Potri.001G338400 [exp]	10.95	0.7167	SDH2.1
AT1G67350			unknown protein		Potri.001G055400 [exp]	11.61	0.6784
AT5G25770			alpha/beta-Hydrolases superfam...		Potri.006G240600 [exp]	13.41	0.6702
AT3G10640		VPS60.1	SNF7 family protein (.1.2)		Potri.008G018300 [exp]	14.96	0.6800

Compare expression of checked genes

Potri.004G101700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.