Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11260 625 / 0 ATSTP1, STP1 sugar transporter 1 (.1) AT4G21480 612 / 0 STP12 sugar transporter protein 12 (.1) AT3G19930 573 / 0 ATSTP4, STP4 sugar transporter 4 (.1) AT5G26340 566 / 0 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT3G19940 566 / 0 Major facilitator superfamily protein (.1) AT5G23270 558 / 0 ATSTP11, STP11 sugar transporter 11 (.1) AT1G50310 555 / 0 ATSTP9 sugar transporter 9 (.1) AT4G02050 527 / 0 STP7 sugar transporter protein 7 (.1) AT1G77210 514 / 2e-179 AtSTP14 sugar transport protein 14, sugar transporter 14 (.1.2) AT1G07340 466 / 7e-161 ATSTP2 sugar transporter 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G101900 [exp] 1012 / 0 AT1G11260 625 / 0.0 sugar transporter 1 (.1) Potri.004G110630 [exp] 975 / 0 AT1G11260 629 / 0.0 sugar transporter 1 (.1) Potri.004G109765 [exp] 972 / 0 AT1G11260 630 / 0.0 sugar transporter 1 (.1) Potri.004G033600 [exp] 603 / 0 AT1G11260 822 / 0.0 sugar transporter 1 (.1) Potri.011G042100 [exp] 592 / 0 AT1G11260 808 / 0.0 sugar transporter 1 (.1) Potri.005G090700 [exp] 584 / 0 AT3G19940 710 / 0.0 Major facilitator superfamily protein (.1) Potri.007G072800 [exp] 584 / 0 AT3G19940 672 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073900 [exp] 583 / 0 AT3G19940 706 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073800 [exp] 577 / 0 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018422 [exp] 602 / 0 AT1G11260 835 / 0.0 sugar transporter 1 (.1) Lus10002597 [exp] 585 / 0 AT1G11260 798 / 0.0 sugar transporter 1 (.1) Lus10013441 [exp] 583 / 0 AT1G50310 731 / 0.0 sugar transporter 9 (.1) Lus10002450 [exp] 566 / 0 AT5G26340 905 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10010534 [exp] 566 / 0 AT5G26340 902 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10042516 [exp] 564 / 0 AT1G11260 608 / 0.0 sugar transporter 1 (.1) Lus10040991 [exp] 550 / 0 AT3G19940 666 / 0.0 Major facilitator superfamily protein (.1) Lus10021924 [exp] 525 / 0 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10005870 [exp] 488 / 4e-169 AT5G26250 601 / 0.0 Major facilitator superfamily protein (.1) Lus10036325 [exp] 483 / 3e-167 AT4G02050 801 / 0.0 sugar transporter protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.004G101950.1 pacid=42794785 polypeptide=Potri.004G101950.1.p locus=Potri.004G101950 ID=Potri.004G101950.1.v4.1 annot-version=v4.1 ATGGGTGCTGGTGGTGGTTTTGTTGCCGGTGATGTTAAAAACTATCCCGGAAAGGTCACTCGGCATGTGGTAAATGCTTGTGTGCTAGGAGCCACGGGAG GATTAATTTTCGGATACGACCTTGGTATCTCGGGTGGTGTGACGTCTATGGCTCCCTTTTTGAGTAAATTTTTCCCAGATGTTTATCGTAAGGAAGCATT AGATACATCCACTAATCAATATTGCAGGTTTAACGATATGGGGCTAACCTTGTTCACATCTTCATTATACCTGGCTGCATTAATTGCATCTTTTGGAGCT TCTTATATCACAAGGACGTGGGGTCGGAAAAGAACAATGCTCCTTGGTGGCATCGTATTTTTCATCGGAGCTGCTCTCAATGCCGGCGCTGTGGACCTCT CAATGCTCATCGCCGGTCGCATTCTCTTAGGTGTTGGAGTTGGTTTTTCAACTCAGTCTGTGCCGCTCTATGTCTCCGAGATGGCTCCACAACAACATCG TGGTGCTTTCAACATTGTGTTCCAACTCGCAATCACTATTGGCATTTTCATAGCTAATCTTGTCAATTACTTGACACCTAAGATTGCTGGAAACCAAGCA TGGCGTTACAGCTTAGGCGGAGCGACCATTCCTGCTGCCCTCATCTGTCTTTCAGCGCTTAAACTGGATGACACTCCAAACTCGTTGTTGGAGCAAGGCA AAGCTGAAAAAGCTCGAGAAATACTTAGAAAGATACGTGGCCTTAACGACAAGGAAATTGAGTCTGAGTTTCAAGATTTAGTCACGGCCAGTGAGGCAGC TAAGCAAGTGGAGCATCCCTGGACTAGAATCCTTAAGAGACAGTATCGGCCGCAACTGACCATGGCTGTAGCTATTCCGTTTTTCCAACAACTTACTGGG ATGAATGTGGTCATGTTCTATGCTCCTGTCCTCCTCCAGAGTATTGGTTTTGAAAGTAATGCTTCCCTCTTATCCACGGTTATCACCGGCGCTGTTAACA TTCTTGCCACCGGTGTTTCAATCTATGGCAGTGATAAGTCTGGAAGAAGATCTCTGTTTCTTTCCGGTGGAGCTGTAATGTTTGTATTTCAGGTTGCGCT CGCAGTTTTAATCGGATCCAAGTTTGGAACATCTGGAGATGTGATTCAATTGCCAAAGTGGTATGCCGGTATAGTTGTAGCATGCATCTGCTTATTTGTT TCTGCCTTTGCGTGGTCATGGGGGCCATTGGGATGGCTAGTTCCGAGTGAAATATTTCCGCTAGAAATTCGATCAGCCGGGCAAAGTATCACCGTGGCAG TCAACATGTTATTCACTTTCTTCATAGCTCAGCTTTTCCTCGCAATGCTTTGCCACTTCAAATTTGGTTTGTTCATCTTCTTTGCAATCTTTGTGGCAAT CATGAGTACCTTCATCTTTTTCTTTTTGCCTGAGACGATGAACATCCCCATTGAAGAGATGTCTAAAGTGTGGAAGCAACATTGGTATTGGAGGAGATTC ACGACTGAAGACGATGATCGCCGAGCTTTGGATGTCATAGTCTAG
AA sequence Show only first row Show all	>Potri.004G101950.1 pacid=42794785 polypeptide=Potri.004G101950.1.p locus=Potri.004G101950 ID=Potri.004G101950.1.v4.1 annot-version=v4.1 MGAGGGFVAGDVKNYPGKVTRHVVNACVLGATGGLIFGYDLGISGGVTSMAPFLSKFFPDVYRKEALDTSTNQYCRFNDMGLTLFTSSLYLAALIASFGA SYITRTWGRKRTMLLGGIVFFIGAALNAGAVDLSMLIAGRILLGVGVGFSTQSVPLYVSEMAPQQHRGAFNIVFQLAITIGIFIANLVNYLTPKIAGNQA WRYSLGGATIPAALICLSALKLDDTPNSLLEQGKAEKAREILRKIRGLNDKEIESEFQDLVTASEAAKQVEHPWTRILKRQYRPQLTMAVAIPFFQQLTG MNVVMFYAPVLLQSIGFESNASLLSTVITGAVNILATGVSIYGSDKSGRRSLFLSGGAVMFVFQVALAVLIGSKFGTSGDVIQLPKWYAGIVVACICLFV SAFAWSWGPLGWLVPSEIFPLEIRSAGQSITVAVNMLFTFFIAQLFLAMLCHFKFGLFIFFAIFVAIMSTFIFFFLPETMNIPIEEMSKVWKQHWYWRRF TTEDDDRRALDVIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Potri.004G101950 [exp]	0	1
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Potri.004G101900 [exp]	1.00	0.9524
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Potri.001G473200 [exp]	5.29	0.9050
AT1G67856			RING/U-box superfamily protein...		Potri.010G047100 [exp]	5.91	0.8761
AT5G66900			Disease resistance protein (CC...		Potri.007G038700 [exp]	6.00	0.8696
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Potri.015G008300 [exp]	7.34	0.8942
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Potri.004G109765 [exp]	10.48	0.8504
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Potri.006G218850 [exp]	12.24	0.8674
AT2G13570	CCAAT	NF-YB7	"nuclear factor Y, subunit B7"...		Potri.007G103901 [exp]	14.42	0.8774
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Potri.003G146600 [exp]	18.13	0.8691
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Potri.012G020200 [exp]	19.59	0.8455	Pt-LAS.3

Compare expression of checked genes

Potri.004G101950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.