Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Ptr4CL8
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05160 827 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 430 / 1e-145 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT1G20500 411 / 5e-138 AMP-dependent synthetase and ligase family protein (.1) AT1G20480 402 / 1e-134 AMP-dependent synthetase and ligase family protein (.1) AT5G38120 400 / 9e-134 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT1G65060 395 / 7e-132 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT3G21240 394 / 2e-131 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT4G19010 382 / 2e-126 AMP-dependent synthetase and ligase family protein (.1) AT1G51680 380 / 4e-126 AT4CL1, 4CL.1, 4CL1 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) AT5G63380 377 / 6e-125 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G112800 [exp] 1006 / 0 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.002G012800 [exp] 433 / 9e-147 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.010G230200 [exp] 431 / 9e-146 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.008G031500 [exp] 424 / 8e-143 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2) Potri.005G248500 [exp] 416 / 8e-140 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.017G033600 [exp] 400 / 5e-134 AT5G63380 598 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.019G049500 [exp] 396 / 6e-132 AT1G65060 781 / 0.0 4-coumarate:CoA ligase 3 (.1.2) Potri.006G169700 [exp] 388 / 2e-129 AT3G21240 802 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.003G099700 [exp] 384 / 1e-127 AT4G19010 634 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021431 [exp] 825 / 0 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016135 [exp] 822 / 0 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10013831 [exp] 640 / 0 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10026544 [exp] 621 / 0 AT4G05160 642 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10015998 [exp] 423 / 2e-142 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10012280 [exp] 426 / 5e-141 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10037934 [exp] 407 / 4e-136 AT1G20510 462 / 2e-157 OPC-8:0 CoA ligase1 (.1.2) Lus10038667 [exp] 397 / 3e-132 AT1G20510 449 / 1e-152 OPC-8:0 CoA ligase1 (.1.2) Lus10026143 [exp] 393 / 6e-131 AT1G51680 838 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10015999 [exp] 384 / 4e-127 AT1G20510 692 / 0.0 OPC-8:0 CoA ligase1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme CL0531 [poplar] [flax] AMP-binding_C PF13193 [poplar] [flax] AMP-binding_C AMP-binding enzyme C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.004G102000.1 pacid=42794180 polypeptide=Potri.004G102000.1.p locus=Potri.004G102000 ID=Potri.004G102000.1.v4.1 annot-version=v4.1 ATGGAGAAATCTGGTTATGGTCGTGATGGTATTTACAGGTCACTAAGACCAAAACTTGTCCTTCCTAAGGATCCTAACCTTTCTTTGGTCTCGTTTCTTT TTAGAAACTCCAATTCTTACCCTCATAAACCGGCTCTTATTGATGCGGATTTGTCTATAACCTTATCTTTTTCAGAGCTCAAATCCATTGTCATCAAGGT CGCTCATGGATTACTCAACCTGGGCATCTCCAAAAATGATGTTGTTCTTATCTTTGCTCCCAATTCTTACCAATTCCCTATCTGTTTCTTGGCTATCACT TCCACTGGTGCTATTGCAACAACTGCAAATCCTCTTTATACAACCTCAGAACTTTCGAAACAGATTAAAGATTCTAATCCCAAGTTGATTATTACAGTCC CTGAATTGTGGGACAAAGTCAAAGGTTTCAATTTGCCTGCTGTCTTTTTAGGACCCAAACGAGTGTCTTTGCCGTTGGAGTCAGGTTCTAGAATCACAAG TTTCGATTCTTTGGTTGGGTTAGGAGGATCTAATTCTCAGTTTCCTTCCAGTAATGTGAAGCAAAGTGATATATCTACGCTTTTGTATTCGTCAGGGACT ACAGGGGTTAGTAAAGGAGTGATTTTGACACATGGGAATTTCATTGCTGCTTCTTTAATGGTCACCATGGATCAAGCAATGGCAGGTGAGATGCACGATG TTTTCCTTTGTTTCTTGCCCATGTTTCATGTGTTTGGATTGGCTGTGATCACTTACTCACAGCTACAAATGGGAAATGCTGTTGTGTCAATGGGAAAGTT TGAATTTGAGATGGTTTTGAAGACTATTGAGAAGCACAGAGTGACCGATATGTGGGTTGTGCCCCCAGTGGTGCTTGCTTTGGCTAAACAGGATATGGTT AAGAAGTATGACATTTCGTCGTTGAGAAATATTGGTTCTGGTGCTGCCCCTCTGGGAAAAGATTTGATGAAGGAATGTGCCAAGAATTTGCCTGATACTA TAATTTCTCAGGGCTATGGCATGACTGAAACTTGTGGCATTGTATCAGTGGAGGATTCGAGACTAGGTGTTCGACATTCTGGCTCTGCTGGAATACTTGC TGCAGGAATTGAGGCCCAGATAGTCAGTGTGGAAACTCTAAAGCCTCTCCCTCCTAATCAGTTAGGGGAAATATGGGTCAGGGGACCCAATATGATGAGA GGTTATTTCAATAATCCGCAAGCCACAAAAGATACCATGGATAAAAAGGGTTGGGTCCATACTGGAGATGTTGGATATTTTGATGATGATGGACAACTTT TTGTGGTCGATCGGATTAAAGAGCTCATCAAGTATAAAGGTTTTCAGGTTGCACCTGCAGAACTGGAAGGGCTGCTAGTTTCTCATCCTCAAATTTTGGA TGCTGTTGTCATCCCATATCCTGATGCTGAAGCTGGTGAGGTCCCAGTTGCATATGTTGTGCGCTCACCCAATAGCGCACTGACTGAAGTAGATGTTCAG AAATTTATTGCTGATCAGGTTGCACCTTTCAAAAGATTGCGGAAGGTGACTTTCATAAATACTGTACCTAAATCAGCTTCAGGAAAAATCCTCAGAAGAG AGCTCATTCAGCAAGTAAAATCCAAGATATGA
AA sequence Show only first row Show all	>Potri.004G102000.1 pacid=42794180 polypeptide=Potri.004G102000.1.p locus=Potri.004G102000 ID=Potri.004G102000.1.v4.1 annot-version=v4.1 MEKSGYGRDGIYRSLRPKLVLPKDPNLSLVSFLFRNSNSYPHKPALIDADLSITLSFSELKSIVIKVAHGLLNLGISKNDVVLIFAPNSYQFPICFLAIT STGAIATTANPLYTTSELSKQIKDSNPKLIITVPELWDKVKGFNLPAVFLGPKRVSLPLESGSRITSFDSLVGLGGSNSQFPSSNVKQSDISTLLYSSGT TGVSKGVILTHGNFIAASLMVTMDQAMAGEMHDVFLCFLPMFHVFGLAVITYSQLQMGNAVVSMGKFEFEMVLKTIEKHRVTDMWVVPPVVLALAKQDMV KKYDISSLRNIGSGAAPLGKDLMKECAKNLPDTIISQGYGMTETCGIVSVEDSRLGVRHSGSAGILAAGIEAQIVSVETLKPLPPNQLGEIWVRGPNMMR GYFNNPQATKDTMDKKGWVHTGDVGYFDDDGQLFVVDRIKELIKYKGFQVAPAELEGLLVSHPQILDAVVIPYPDAEAGEVPVAYVVRSPNSALTEVDVQ KFIADQVAPFKRLRKVTFINTVPKSASGKILRRELIQQVKSKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G05160			AMP-dependent synthetase and l...		Potri.004G102000 [exp]	0	1	Ptr4CL8
					Potri.011G051000 [exp]	5.65	0.8942
AT1G77930			Chaperone DnaJ-domain superfam...		Potri.002G090600 [exp]	7.21	0.9147
AT3G10970			Haloacid dehalogenase-like hyd...		Potri.019G049000 [exp]	8.00	0.9303
AT4G38460		GGR	geranylgeranyl reductase (.1)		Potri.009G139600 [exp]	9.16	0.9141
AT1G13990			unknown protein		Potri.010G164400 [exp]	10.00	0.9042
AT5G02420			unknown protein		Potri.009G003400 [exp]	12.84	0.8945
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.012G083000 [exp]	16.97	0.8814
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.017G032700 [exp]	20.39	0.9072
AT4G14450		ATBET12	unknown protein		Potri.010G073900 [exp]	21.44	0.8903	Pt-ATBET12.2
AT1G07040			unknown protein		Potri.008G194800 [exp]	22.75	0.9012

Compare expression of checked genes

Potri.004G102000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.