Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38660 350 / 9e-122 APE1 acclimation of photosynthesis to environment (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G112700 [exp] 442 / 1e-158 AT5G38660 302 / 4e-103 acclimation of photosynthesis to environment (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017574 [exp] 364 / 2e-127 AT5G38660 363 / 5e-127 acclimation of photosynthesis to environment (.1.2) Lus10033538 [exp] 347 / 4e-120 AT5G38660 343 / 1e-118 acclimation of photosynthesis to environment (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11016 [poplar] [flax] DUF2854 Protein of unknown function (DUF2854)
Representative CDS sequence Show only first row Show all	>Potri.004G102100.5 pacid=42794157 polypeptide=Potri.004G102100.5.p locus=Potri.004G102100 ID=Potri.004G102100.5.v4.1 annot-version=v4.1 ATGACAGCAATAATATCATCACCAGCTGCAACAGCAACAACAAGAACAGCCATTTTCAACTATGATGTCCAATTTGGAAGGTTTTGTAATAACAAGAACA ACAACAAAGGTTGCAGCTTTCTCTCTGTACATTCTTTTTCACCACCAAAATTGAGTCCTAAACAACCCCACAGGGTTAAGCTTGTGTTTTTAACCAAAGC TGCTGATTCAAGCCAGGCCTCTCCCTCTTCTACTGCTACTGCTTCCAAAACTATTATCACTGATGATGAGTTCTCTCTTGCTAAGGTCTCATTTGGTGTT ATTGGACTGGGTTTTGGGATTTCGCTCCTGTCGTATGGTTTTGGGGCTTACTTTAACATCCTTCCAGGATCTGAATGGTCGGCGATAATGCTAACATATG GCTTCCCTCTTGCAATAATTGGTATGGCTCTCAAGTATGCAGAACTGAAGCCAGTGCCATGCTTGACTTATTCCGATGCTGAGATGTTAAGAGAAAAATG TGCCACTCCAATCCTTAAACAGGTCAGGAACGATGTTATAAGATATCGGTATGGAGACGAGCAGCATTTGGACGAGGCATTGAAACGAATTTTCCAGTAT GGTCTGGGTGGAGGAATTCCGAGGCGGAATGCACCTATTCTGCAGATGATCCGTGAAGAAGTCACAGAGGATGGTAAATACTGTCTAGTCCTGGTCTTCG AGTCAAAGGCTTTGCAGCTGTCAGACTTTGAAAAAAGACAGGGAAAATTCACTTCATTCTTTGGACCAGATATCACAGCTGAAATTGGGAAAGGAGAAAA CAATCTATACGAAGTTCGACTTGTTTCCAACTTAAACGCCAACGCATCACCTTCATGA
AA sequence Show only first row Show all	>Potri.004G102100.5 pacid=42794157 polypeptide=Potri.004G102100.5.p locus=Potri.004G102100 ID=Potri.004G102100.5.v4.1 annot-version=v4.1 MTAIISSPAATATTRTAIFNYDVQFGRFCNNKNNNKGCSFLSVHSFSPPKLSPKQPHRVKLVFLTKAADSSQASPSSTATASKTIITDDEFSLAKVSFGV IGLGFGISLLSYGFGAYFNILPGSEWSAIMLTYGFPLAIIGMALKYAELKPVPCLTYSDAEMLREKCATPILKQVRNDVIRYRYGDEQHLDEALKRIFQY GLGGGIPRRNAPILQMIREEVTEDGKYCLVLVFESKALQLSDFEKRQGKFTSFFGPDITAEIGKGENNLYEVRLVSNLNANASPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38660		APE1	acclimation of photosynthesis ...		Potri.004G102100 [exp]	0	1
AT3G24190			Protein kinase superfamily pro...		Potri.001G050700 [exp]	1.00	0.9771
AT1G18180			Protein of unknown function (D...		Potri.015G039900 [exp]	2.82	0.9442
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Potri.005G249200 [exp]	3.16	0.9433	Pt-FTSH2.1
AT5G13650		SVR3	SUPPRESSOR OF VARIEGATION 3, e...		Potri.006G053000 [exp]	3.16	0.9730
AT4G31980			unknown protein		Potri.001G046000 [exp]	3.46	0.9543
AT1G78510		SPS1	solanesyl diphosphate synthase...		Potri.001G380500 [exp]	3.46	0.9679
AT1G16720		HCF173	high chlorophyll fluorescence ...		Potri.007G003500 [exp]	3.87	0.9550
					Potri.005G182750 [exp]	5.29	0.9584
AT5G50100			Putative thiol-disulphide oxid...		Potri.015G072000 [exp]	8.94	0.9358
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Potri.016G115500 [exp]	9.48	0.9399	CAX3.2

Compare expression of checked genes

Potri.004G102100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.