Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G112500 [exp] 672 / 0 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017572 [exp] 305 / 9e-101 ND / Lus10033536 [exp] 300 / 2e-98 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G102400.4 pacid=42794230 polypeptide=Potri.004G102400.4.p locus=Potri.004G102400 ID=Potri.004G102400.4.v4.1 annot-version=v4.1 ATGGTACTTGTACAATCCTCCAAACTCTCTCTTCCCCCTTCCGTTTCAGCTACAAAATCCCTTCTTTTTGAACCAAACTCTCTTTCTTTAGCCTTAATGC ACACTGATTCCTCACTTTCCCTCTTTCCTTCCCTTCCCTTCCCTTCCCTTCCCTCTCTCCCTCCAAAACCCCAAACCCTAGTTCCCTCCCCTTCCTCTTC CTCTTCTTTCCTTCTCATCCACCAAGACCCTATCCCTAAAGTCCTCTTTCTTGTTGCTGGCCCATATAAAGGCGGGTCTCAGATTCTCTTAAGGTTCCAT GTTTTACAAAATGACAGCTTTTTTTATAAACCCCAAGTTGTTTGCAATCAAAAGGGTCTTGCTTTTGATTCAAAACTTGGTGTTTTGCTGGATATAAATC ATGGGGTTTCAATAAAGATTGTTGGGTCTATTAATTTTTTTGTGCTGCACTCAGTTTCTAGCAAGAAAGTTTGGGTCTTTGCGGTGAAAATTATTGATGA TGGTGATGGTGAGATGCTGAAATTGATGAGGTGTGCGGTGATTGAGTGTAGTGTGCCTGTTTGGTCAATAAGTGTTTCTTCTGGAGTCTTGATTTTAGGG GAGGATAATGGGGTCAGGGTTTTTAATTTGAGGCAGCTGGTGAAATGGAAAGTTAAGAAAGTCAAGGGTTTTGATTCGAATGGGAAGTTGGATCGTAAAG GATTGAAATCGTCAAATGGTGACGGGGAGGATAATGGGGTCAGTTCAAGTTCCGGGAATGCTTGCAATGGTGCGTTGGATGGGAAGACTGATAAACATTG TGTTTCTGTAAAACAGAGATCTGTAAGATGCAGCCAAGACTCTGGTGAAGGGGGTGCTTGTTTTGTGGCATTTAAGAGGGAGGCGACTGAGGGCATGAAA CCTACAACTTTGAAGGCAGTTTCTATACAGGCATTACCTCCCAAGAAATTTGTGATTTTGGACTCTATAGGAGATTTACATATCTTGTGCCTGTCTGCCC CTGTTGTTGGACCAAATGTCATGGCTCACATGAGGCAGTTGCCCCATAGTATGAAAGTGCAAAAGCTGGCTGTTTTTCCAGATTTTTCCTCGAAAATGCA AACTTTTTGGGTATCAGATGGGCTCCATTCCGTGCACACGATAACTCTATCCAACATGGATGCTGCTGTCAATACAAACAATGGAGATGTGACCCAGGAA AAGTTAATTCGGATCACAGTTATTCAAGCAATTCTTTCTGCTGAAAAGATACAAGATCTTATACCTTTGGGTGCGAATGGTATTTTGATTCTTGGACAAG GAAATATATATTCATACACAATTCCCTGA
AA sequence Show only first row Show all	>Potri.004G102400.4 pacid=42794230 polypeptide=Potri.004G102400.4.p locus=Potri.004G102400 ID=Potri.004G102400.4.v4.1 annot-version=v4.1 MVLVQSSKLSLPPSVSATKSLLFEPNSLSLALMHTDSSLSLFPSLPFPSLPSLPPKPQTLVPSPSSSSSFLLIHQDPIPKVLFLVAGPYKGGSQILLRFH VLQNDSFFYKPQVVCNQKGLAFDSKLGVLLDINHGVSIKIVGSINFFVLHSVSSKKVWVFAVKIIDDGDGEMLKLMRCAVIECSVPVWSISVSSGVLILG EDNGVRVFNLRQLVKWKVKKVKGFDSNGKLDRKGLKSSNGDGEDNGVSSSSGNACNGALDGKTDKHCVSVKQRSVRCSQDSGEGGACFVAFKREATEGMK PTTLKAVSIQALPPKKFVILDSIGDLHILCLSAPVVGPNVMAHMRQLPHSMKVQKLAVFPDFSSKMQTFWVSDGLHSVHTITLSNMDAAVNTNNGDVTQE KLIRITVIQAILSAEKIQDLIPLGANGILILGQGNIYSYTIP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.004G102400 [exp]	0	1
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.019G021200 [exp]	5.91	0.8119
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Potri.002G170600 [exp]	7.21	0.8323
AT5G56250		HAP8	hapless 8 (.1.2)		Potri.001G472400 [exp]	9.00	0.8071
AT1G79730		ELF7	EARLY FLOWERING 7, hydroxyprol...		Potri.003G048900 [exp]	11.40	0.8187
AT1G11060			WAPL (Wings apart-like protein...		Potri.011G049300 [exp]	12.48	0.8284
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Potri.014G055800 [exp]	12.64	0.8276
AT5G09950			Tetratricopeptide repeat (TPR)...		Potri.013G129500 [exp]	16.91	0.8301
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Potri.004G087400 [exp]	21.49	0.7902
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Potri.019G047300 [exp]	27.03	0.7961
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Potri.018G146001 [exp]	27.60	0.8137

Compare expression of checked genes

Potri.004G102400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.