Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	MANG.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25780 261 / 6e-88 AOC3, AOC2 allene oxide cyclase 3 (.1) AT1G13280 260 / 2e-87 AOC4 allene oxide cyclase 4 (.1) AT3G25770 255 / 1e-85 AOC2, AOC3 allene oxide cyclase 2 (.1) AT3G25760 249 / 3e-83 AOC1, ERD12 early-responsive to dehydration 12, allene oxide cyclase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G117300 [exp] 289 / 8e-99 AT3G25780 275 / 4e-93 allene oxide cyclase 3 (.1) Potri.017G112400 [exp] 206 / 7e-68 AT3G25780 172 / 1e-54 allene oxide cyclase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017571 [exp] 305 / 2e-105 AT3G25780 266 / 6e-90 allene oxide cyclase 3 (.1) Lus10033535 [exp] 300 / 4e-103 AT3G25780 264 / 6e-89 allene oxide cyclase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0650 [poplar] [flax] AOC_barrel PF06351 [poplar] [flax] Allene_ox_cyc Allene oxide cyclase
Representative CDS sequence Show only first row Show all	>Potri.004G102500.2 pacid=42794367 polypeptide=Potri.004G102500.2.p locus=Potri.004G102500 ID=Potri.004G102500.2.v4.1 annot-version=v4.1 ATGGCGGCTTATTCAAGCTCTGCTTTGAGATCCATCTCTTCTGTGAAAGCATCTGCAGCAAGATCACACACCTGTGGCGTTGTGCCCACCAAACCATCAC TCTTGTCTTTCAAGCTGGCCCAAAACCCATGTCTCCTCACAAAAACTACAAGCCTTGGCAACTTCTCTGGGACGAAGAGATCCTTCTCTTGCAAAAGCCA AGCTGCCTCGACTGAGGATTCAAGACCCACCAAAGTTCAAGAGCTGAGTGTCTATGAGATCAATGAGAGAGACCGTGGAAGCCCTGCTTATCTTCGTTTG AGCCAGAAATCTGTTAATTCTCTTGGCGATCTTGTGCCTTTTAGCAACAAACTTTACACCGGAGACCTACAGAAACGGGTAGGAATAACAGCTGGACTAT GCGTGCTGATCCAAAACAAACCGGAAAAGAAAGGTGACAGGTATGAGGCGATCTACAGCTTCTACTTTGGCGACTACGGTCACATTGCGGTGCAGGGATC TTATCTGACCTATGAGGACACGTATCTCGCTGTGACTGGAGGGTCAGGTATTTTTGAAGGGGTGTATGGTCAGGTTAAGCTACAGCAGCTTGTGTTCCCT TTCAAGCTGTTCTACACCTTTTATTTGAAGGGTCTCAAGGCGGACTTGCCTGAGGAGCTGCTTGGGAAGGCTGTCGAGCCTAGCCCCGCTGTCGAGCCGA GCCCCGCGGCTAAGGCTTGTGAGCCACACGCTGTCATTGCTAATTATACTAACTAA
AA sequence Show only first row Show all	>Potri.004G102500.2 pacid=42794367 polypeptide=Potri.004G102500.2.p locus=Potri.004G102500 ID=Potri.004G102500.2.v4.1 annot-version=v4.1 MAAYSSSALRSISSVKASAARSHTCGVVPTKPSLLSFKLAQNPCLLTKTTSLGNFSGTKRSFSCKSQAASTEDSRPTKVQELSVYEINERDRGSPAYLRL SQKSVNSLGDLVPFSNKLYTGDLQKRVGITAGLCVLIQNKPEKKGDRYEAIYSFYFGDYGHIAVQGSYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFP FKLFYTFYLKGLKADLPEELLGKAVEPSPAVEPSPAAKACEPHAVIANYTN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25780		AOC3, AOC2	allene oxide cyclase 3 (.1)		Potri.004G102500 [exp]	0	1	MANG.1
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Potri.010G187800 [exp]	2.00	0.9402	Pt-FAD3.3
AT2G06050		AtOPR3, DDE1, O...	DELAYED DEHISCENCE 1, oxophyto...		Potri.018G065600 [exp]	3.00	0.9284	OPR3.2
AT4G05100	MYB	ATMYB74	myb domain protein 74 (.1)		Potri.004G026600 [exp]	6.00	0.9401
AT5G13220	ZIM	JAS1, TIFY9, JA...	TIFY DOMAIN PROTEIN 9, JASMONA...		Potri.003G165000 [exp]	7.93	0.9381
AT5G12340			unknown protein		Potri.009G071100 [exp]	8.94	0.9377
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.004G208500 [exp]	10.00	0.9367	HMGR3.4
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Potri.005G223100 [exp]	10.19	0.9284
AT4G20970	bHLH	bHLH162	basic helix-loop-helix (bHLH) ...		Potri.013G129800 [exp]	11.95	0.9270
AT1G22170			Phosphoglycerate mutase family...		Potri.002G093300 [exp]	12.72	0.8716
AT5G34930			arogenate dehydrogenase (.1)		Potri.006G062600 [exp]	12.76	0.8478

Compare expression of checked genes

Potri.004G102500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.