Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37630 243 / 7e-78 MYB AtPHAN, AtMYB91, MYB91, AS1 ARABIDOPSIS PHANTASTICA-LIKE 1, MYB DOMAIN PROTEIN 91, ASYMMETRIC LEAVES 1, myb-like HTH transcriptional regulator family protein (.1) AT5G52600 96 / 3e-23 MYB AtMYB82 myb domain protein 82 (.1) AT1G08810 96 / 2e-22 MYB ATMYB60 myb domain protein 60 (.1.2) AT3G01530 92 / 8e-22 MYB ATMYB57 myb domain protein 57 (.1) AT1G25340 92 / 6e-21 MYB ATMYB116 myb domain protein 116 (.1.2) AT2G32460 94 / 9e-21 MYB ATMYB101, AtM1 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) AT2G26950 92 / 1e-20 MYB ATMYB104 myb domain protein 104 (.1) AT4G13480 90 / 2e-20 MYB ATMYB79 myb domain protein 79 (.1) AT3G46130 90 / 2e-20 MYB PFG3, ATMYB111 ATMYB48, ATMYB48-3, ATMYB48-1, ATMYB48-2 myb domain protein 48 (.1.2.3.4) AT5G40350 89 / 2e-20 MYB ATMYB24 myb domain protein 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G112300 [exp] 464 / 2e-164 AT2G37630 188 / 2e-56 ARABIDOPSIS PHANTASTICA-LIKE 1, MYB DOMAIN PROTEIN 91, ASYMMETRIC LEAVES 1, myb-like HTH transcriptional regulator family protein (.1) Potri.006G085900 [exp] 252 / 4e-81 AT2G37630 414 / 2e-144 ARABIDOPSIS PHANTASTICA-LIKE 1, MYB DOMAIN PROTEIN 91, ASYMMETRIC LEAVES 1, myb-like HTH transcriptional regulator family protein (.1) Potri.012G055600 [exp] 97 / 2e-22 AT1G68320 244 / 1e-79 myb domain protein 62 (.1) Potri.011G040400 [exp] 95 / 5e-22 AT2G31180 163 / 6e-49 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.015G046200 [exp] 96 / 6e-22 AT1G25340 241 / 2e-78 myb domain protein 116 (.1.2) Potri.019G045900 [exp] 95 / 7e-22 AT1G08810 298 / 5e-101 myb domain protein 60 (.1.2) Potri.013G067500 [exp] 95 / 7e-22 AT1G08810 293 / 8e-99 myb domain protein 60 (.1.2) Potri.008G122100 [exp] 95 / 7e-22 AT1G68320 274 / 1e-91 myb domain protein 62 (.1) Potri.004G115600 [exp] 92 / 7e-22 AT3G30210 227 / 9e-75 myb domain protein 121 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025355 [exp] 220 / 3e-69 AT2G37630 422 / 2e-148 ARABIDOPSIS PHANTASTICA-LIKE 1, MYB DOMAIN PROTEIN 91, ASYMMETRIC LEAVES 1, myb-like HTH transcriptional regulator family protein (.1) Lus10024392 [exp] 186 / 1e-55 AT2G37630 456 / 3e-161 ARABIDOPSIS PHANTASTICA-LIKE 1, MYB DOMAIN PROTEIN 91, ASYMMETRIC LEAVES 1, myb-like HTH transcriptional regulator family protein (.1) Lus10034372 [exp] 94 / 5e-22 AT3G30210 195 / 5e-62 myb domain protein 121 (.1) Lus10009522 [exp] 95 / 6e-22 AT1G08810 284 / 9e-96 myb domain protein 60 (.1.2) Lus10040063 [exp] 97 / 8e-22 AT2G32460 229 / 1e-69 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10020343 [exp] 94 / 1e-21 AT1G08810 286 / 1e-96 myb domain protein 60 (.1.2) Lus10005079 [exp] 93 / 1e-21 AT3G30210 199 / 1e-63 myb domain protein 121 (.1) Lus10030677 [exp] 94 / 2e-21 AT3G47600 293 / 1e-98 myb domain protein 94 (.1) Lus10041435 [exp] 94 / 2e-21 AT1G68320 262 / 2e-86 myb domain protein 62 (.1) Lus10009037 [exp] 93 / 2e-21 AT1G68320 231 / 1e-75 myb domain protein 62 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13921 [poplar] [flax] Myb_DNA-bind_6 Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.004G102600.1 pacid=42794051 polypeptide=Potri.004G102600.1.p locus=Potri.004G102600 ID=Potri.004G102600.1.v4.1 annot-version=v4.1 ATGAAGGAGAGACAACGTTGGCAACCAGAGGAAGATGCTGTGCTAAGAGCTTATGTTAAACAATATGGTCCAAAAGAATGGAACCTCATCTCTCAACGCG TGGAAGCTACTGGCAAAACCCTCAACCGAGACCCAAAATCCTGCCTTGAACGCTGGAAAAACTACCTCAAACCAGGCATCAAGAAAGGATCTTTAATCCC AGAAGAGCAAACCCTTGTCATTTCTCTTCAAGCCAAGTACGGTAACAAGTGGAAAACGATAGCTAGTGAAGTCCCAGGCCGCACAGCAAAGAGGCTAAGT AAGTGGTGGGAGGTTTTTAAAGAGAGGCAATCAAAGTCCAAATCCAAGTCTTTATTGCACCACCACCATTGCACGGAATACTCCAATCAGAACCACCATC TAGAAGATAATATTCCGTTCACCGGAGATAAAACATCTGGTCAGGGAAACTACGACCACATCTTAGAGACCTTTGCAGAGAAGTACGTGCAACCGAAGAT CTTCAATCAGTTTCAACCTTTTACCACTAGTTTATCCACTATGATACCTCCAATGCCCGAACCTGACCCGGTTCTTTCACTCGGGTCGGTTTGGATGAAC CCGGGTTCACATATATCATCCTCAACCAGCACCACAGTTTCAGCCACCCCATCACCGTACGTGAGCTTGTCACTATCTCCATCTGATCGCGGCATGGACC CGGACCCGACCCGACTCATGCCGGGCCAACAAATGGGCACTTTGGTTCAGTATTGCAAGGAGCTTGAGGAGGGGAGGCAAAACTGTTTGCAACATAAAAG GGAGGCAACATGGAGGCTAAGTAGACTAGAGCAGCAGCTGGAGTCAGAGAAAGCAAGGAAAAGAAGGGAGAAAGCGAAGGAGATAGAGGCAAAGATAAGG TGTTTGAGAGAGGAAGAGGAGAGTTTTACGAGTAAGATCGAGAGTGAGTATGAAGAGCAGCTGAGTACATGGCGTAGAGATGCTGAGAGAAAAGAGGCAA AGCTTGTGGAAGCTTGGTGCAGCAAGCATGTCAAGTTTGTTAAGCGAGTTGGGGTACATTTTGGTGGTGGTGCAGCCAGGGATTAG
AA sequence Show only first row Show all	>Potri.004G102600.1 pacid=42794051 polypeptide=Potri.004G102600.1.p locus=Potri.004G102600 ID=Potri.004G102600.1.v4.1 annot-version=v4.1 MKERQRWQPEEDAVLRAYVKQYGPKEWNLISQRVEATGKTLNRDPKSCLERWKNYLKPGIKKGSLIPEEQTLVISLQAKYGNKWKTIASEVPGRTAKRLS KWWEVFKERQSKSKSKSLLHHHHCTEYSNQNHHLEDNIPFTGDKTSGQGNYDHILETFAEKYVQPKIFNQFQPFTTSLSTMIPPMPEPDPVLSLGSVWMN PGSHISSSTSTTVSATPSPYVSLSLSPSDRGMDPDPTRLMPGQQMGTLVQYCKELEEGRQNCLQHKREATWRLSRLEQQLESEKARKRREKAKEIEAKIR CLREEEESFTSKIESEYEEQLSTWRRDAERKEAKLVEAWCSKHVKFVKRVGVHFGGGAARD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Potri.004G102600 [exp]	0	1
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Potri.013G102500 [exp]	6.48	0.9629
AT1G73680		ALPHADOX2 ,ALPH...	alpha dioxygenase (.1.2)		Potri.012G049500 [exp]	11.74	0.9614
AT1G68620			alpha/beta-Hydrolases superfam...		Potri.003G192600 [exp]	16.61	0.9555
AT1G14820			Sec14p-like phosphatidylinosit...		Potri.010G105400 [exp]	18.16	0.9496
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008100 [exp]	23.23	0.9583
AT3G50390			Transducin/WD40 repeat-like su...		Potri.006G239600 [exp]	24.33	0.9453
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008000 [exp]	25.65	0.9456
AT5G15310	MYB	ATMYB16, ATMIXT...	myb domain protein 16 (.1.2)		Potri.008G089700 [exp]	27.01	0.9573
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Potri.011G076400 [exp]	28.28	0.9404
AT3G55090		ABCG16	ATP-binding cassette G16, ABC-...		Potri.008G047900 [exp]	30.85	0.9533

Compare expression of checked genes

Potri.004G102600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.