Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61340 73 / 2e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G060900 [exp] 91 / 7e-21 AT5G61340 164 / 5e-48 unknown protein Potri.012G068000 [exp] 63 / 2e-11 AT5G61340 154 / 2e-45 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021641 [exp] 51 / 6e-07 AT5G61340 191 / 5e-58 unknown protein Lus10034727 [exp] 48 / 6e-06 AT5G61340 193 / 4e-59 unknown protein Lus10015723 [exp] 47 / 1e-05 AT5G61340 135 / 2e-37 unknown protein Lus10003483 [exp] 45 / 4e-05 AT5G61340 153 / 2e-44 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G102800.3 pacid=42796465 polypeptide=Potri.004G102800.3.p locus=Potri.004G102800 ID=Potri.004G102800.3.v4.1 annot-version=v4.1 ATGGAGAAGGCAGCAAAAATCATTAGAAGATCAATCCACACCTTGCTGAAAGATTTCCACTACTTCACCAGCATCCCAGCAATCCTATTGCTTCCATTCT CATCTTCAATTCTCCTCTCACTATCCTTCTATCAACCTTGTTCACTGACCAGATCAATTTTTCAAGGCCGAAGAGTTTCTCTTCTTGTTTTAGATCTTCC TCAGATGATATTTGTCCTTGTTTTTAGTCTTCCACTTGCACTATCCTCTCTTGTCCTAGCAAAAGCATCCATCATTCAATCTCTAAATCACCATAAACCT GTGTTTTCACTATCTTGTTCGTCTCCTGTGTCACTTTGTTACAAGCCTCTAGTCTTAACCTGCATTTGCAATATAATCCTTACTGTAACCATTACCACAA CAACCCTCTCGTTCCTTTTCGAAGCCTCTAGTTTCTTTAAAGGTCTATTGATTCTATCATCCATCAGGCCTTTCTTCGATCTGGCAGCGGGGATTGTTTT CTACATGGTTTTAACCAATACCATGGCCACGTGCAATTTAGCCTTGGTTGTAGCAGGTATTGATAATTGCACTATATACAAGTCTCTTCGTAAGGCTTGC TTGTTGAGAAAGGGTACAGATTCAATGGCTTTGTTGTTGGCTCTTCCCATAAATCTAGGTCTTGTTGCTACTGAAGCCTTGTTCCGATACCGGGTTGTAA GAGCTTATGATCCTGTCTTTGGAAGGTTTAGTATGCCTATGCTCTTGGAGGGATTGTTGATTTCTTATCTGTTTTCCCTTCTAGTAGTTCTTGACACAAT TTCCAGTTACTTGTTTATCAGGAATTGTGATCCAAAAATTGGGAGAGAAGGAGCAGAAATATGTGTTCAAATTGAGCCTGTCAAAGATGACAGTGGGATT TCTGATGGTTCACAAGGACTAGAGATGGTGTTCGTAGACTGA
AA sequence Show only first row Show all	>Potri.004G102800.3 pacid=42796465 polypeptide=Potri.004G102800.3.p locus=Potri.004G102800 ID=Potri.004G102800.3.v4.1 annot-version=v4.1 MEKAAKIIRRSIHTLLKDFHYFTSIPAILLLPFSSSILLSLSFYQPCSLTRSIFQGRRVSLLVLDLPQMIFVLVFSLPLALSSLVLAKASIIQSLNHHKP VFSLSCSSPVSLCYKPLVLTCICNIILTVTITTTTLSFLFEASSFFKGLLILSSIRPFFDLAAGIVFYMVLTNTMATCNLALVVAGIDNCTIYKSLRKAC LLRKGTDSMALLLALPINLGLVATEALFRYRVVRAYDPVFGRFSMPMLLEGLLISYLFSLLVVLDTISSYLFIRNCDPKIGREGAEICVQIEPVKDDSGI SDGSQGLEMVFVD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61340			unknown protein		Potri.004G102800 [exp]	0	1
					Potri.012G058050 [exp]	1.41	0.7385
AT2G33255			Haloacid dehalogenase-like hyd...		Potri.010G063700 [exp]	2.64	0.7566
AT5G18480		PGSIP6	plant glycogenin-like starch i...		Potri.013G049100 [exp]	6.00	0.6682
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Potri.013G020300 [exp]	6.70	0.7270	ATS9.2
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Potri.014G069600 [exp]	10.81	0.6673
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Potri.011G099701 [exp]	12.40	0.6688
AT2G40080		ELF4	EARLY FLOWERING 4, Protein of ...		Potri.008G068200 [exp]	14.07	0.6576	ELF4.1
AT4G00750			S-adenosyl-L-methionine-depend...		Potri.002G154400 [exp]	19.49	0.6300
AT2G42520			P-loop containing nucleoside t...		Potri.003G217800 [exp]	19.62	0.6326
AT4G03960		AtPFA-DSP4	plant and fungi atypical dual-...		Potri.011G021100 [exp]	24.24	0.6013

Compare expression of checked genes

Potri.004G102800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.