Plant FIBer expression Database

Potri.004G102875 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G112200
[exp]
50 / 1e-08 AT1G18700 746 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3.4)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.004G102875.1 pacid=42795597 polypeptide=Potri.004G102875.1.p locus=Potri.004G102875 ID=Potri.004G102875.1.v4.1 annot-version=v4.1
ATGGAGGAAACAGTACATAGATTGCTTGTAGCTCCTAAGTTGCAAATAATTGGCTTTCTGGTGATGGTTGAAAACTTGAACCTTGGGTTCATTCCTTCAC
CATGCTATAGACATTACAATCTTTGTGTCAATGGACTTCCTTCACTTGTTGCTTTTCCATCGGGTTGTAAACGTCAGATTGTCTTGTTAGGTTTGAGGGT
GATCTCTCCATTGATGCAGTCACTAATTGGTTTGCAACAACAGTGCTGA
AA sequence
>Potri.004G102875.1 pacid=42795597 polypeptide=Potri.004G102875.1.p locus=Potri.004G102875 ID=Potri.004G102875.1.v4.1 annot-version=v4.1
MEETVHRLLVAPKLQIIGFLVMVENLNLGFIPSPCYRHYNLCVNGLPSLVAFPSGCKRQIVLLGLRVISPLMQSLIGLQQQC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G18700 DNAJ heat shock N-terminal dom... Potri.004G102875
[exp]
0 1
Potri.012G127000
[exp]
2.64 0.7442
AT4G15560 AtCLA1, DXS, DX... 1-DEOXY-D-XYLULOSE 5-PHOSPHATE... Potri.007G058500
[exp]
28.46 0.6305
AT1G54210 ATATG12, APG12,... AUTOPHAGY 12 A, AUTOPHAGY 12, ... Potri.003G064300
[exp]
34.14 0.5698
Potri.003G203701
[exp]
40.98 0.5941
AT5G13750 ZIFL1 zinc induced facilitator-like ... Potri.006G026200
[exp]
42.28 0.6464
AT3G54190 Transducin/WD40 repeat-like su... Potri.013G091700
[exp]
43.71 0.5760
AT5G35330 MBD2, MBD02, AT... METHYL-CPG-BINDING DOMAIN PROT... Potri.018G145500
[exp]
50.79 0.6508
AT1G68640 bZIP PAN PERIANTHIA, bZIP transcription... Potri.008G118300
[exp]
63.52 0.6325 PAN.2
AT5G48440 FAD-dependent oxidoreductase f... Potri.014G018300
[exp]
69.39 0.5811
AT3G01130 unknown protein Potri.009G125832
[exp]
73.70 0.6177

Potri.004G102875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.