Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39050 352 / 4e-117 PMAT1 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) AT5G39090 330 / 4e-109 HXXXD-type acyl-transferase family protein (.1) AT3G29590 327 / 1e-107 AT5MAT HXXXD-type acyl-transferase family protein (.1) AT3G29635 320 / 8e-105 HXXXD-type acyl-transferase family protein (.1) AT5G39080 315 / 5e-103 HXXXD-type acyl-transferase family protein (.1) AT3G29670 301 / 1e-97 PMAT2 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) AT3G29680 272 / 2e-86 HXXXD-type acyl-transferase family protein (.1) AT5G61160 272 / 3e-86 AACT1 anthocyanin 5-aromatic acyltransferase 1 (.1) AT1G03495 177 / 4e-50 HXXXD-type acyl-transferase family protein (.1) AT1G03940 175 / 4e-49 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G103200 [exp] 846 / 0 AT5G39050 374 / 1e-125 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103100 [exp] 822 / 0 AT5G39050 366 / 1e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G120700 [exp] 533 / 0 AT5G39050 343 / 1e-113 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.009G019700 [exp] 455 / 1e-157 AT3G29590 304 / 1e-98 HXXXD-type acyl-transferase family protein (.1) Potri.004G110700 [exp] 453 / 1e-156 AT5G39050 369 / 1e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110400 [exp] 451 / 7e-156 AT5G39050 363 / 2e-121 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110640 [exp] 449 / 5e-155 AT5G39050 365 / 2e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109300 [exp] 448 / 7e-155 AT5G39050 365 / 3e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109800 [exp] 448 / 7e-155 AT5G39050 368 / 2e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033599 [exp] 367 / 1e-122 AT3G29635 307 / 1e-99 HXXXD-type acyl-transferase family protein (.1) Lus10020721 [exp] 365 / 6e-122 AT5G39050 280 / 2e-89 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10021390 [exp] 343 / 1e-113 AT3G29590 283 / 7e-91 HXXXD-type acyl-transferase family protein (.1) Lus10005362 [exp] 337 / 2e-111 AT3G29635 292 / 4e-94 HXXXD-type acyl-transferase family protein (.1) Lus10041658 [exp] 328 / 8e-108 AT3G29590 298 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10020514 [exp] 327 / 1e-107 AT3G29590 296 / 9e-96 HXXXD-type acyl-transferase family protein (.1) Lus10029276 [exp] 327 / 3e-107 AT5G39050 314 / 1e-102 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10021388 [exp] 307 / 2e-99 AT3G29635 278 / 3e-88 HXXXD-type acyl-transferase family protein (.1) Lus10035802 [exp] 307 / 5e-99 AT5G39050 276 / 2e-87 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10021389 [exp] 303 / 6e-98 AT3G29590 295 / 4e-95 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.004G103300.1 pacid=42794703 polypeptide=Potri.004G103300.1.p locus=Potri.004G103300 ID=Potri.004G103300.1.v4.1 annot-version=v4.1 ATGGAAGTCGAAAACCAAGTAAACACCATCGATGTCTGCCAAGTTACTCCTTACTTCGACTCATCGGAGTCAGCTACCGAGTTATCTCTTCCGTTAACCT TCCACGACATTATGTGGTTGAAATTTCCTCCAGTTGAACGCATATTTTTCTATAAACACACTGAGTCAACTCCAACTTTCTTCAATTCAGTGATCCTTCC CAAACTCAAACACTCTCTTTCTCATACACTCCTTCACTTCCTTCCTCTTGCTGGCAACCTTATCTGGCCTCCACAAGCCATCAAACCCATCATCCTATAC ACTCCTGACGATGGTGTTCAGCTCACAGTTGCTGAGTCCAGTGCTGACTTTCATCTCCTCTCGGGAAATGAAGTCCATGAAGCTGCAGATTCTCGTCCTT ATATACCCGAGTTGCCGGTCACTGACTCAAAGGCATCCGTTATAGCTTTGAAAATAACCTTATTTCCTAATAACGGCTTTTGCATTGGCATCTCTGCCCA CCATTCAGTCCTTGATGGCAAAAGCTCGATCATGTTTATCAAAGCATGGGCTCACTTCTGCAAACTCGGTGATGAAGACAAACGACAATATCCAGCTTTG TTGACAGAACTAACACCTGTTTTTGATCGAATAGGTATACAAGACCCTGAAGGGTTGGGCATGGTGTATTTGAACAACTGGTTAGAATTAAAATGGCCTG GTGTGGATCTCAACCCAAGAAGCTTACAACTTTTGCCAGCTATAGTAGTTCGATCTAGCTCAGTACGAGCAACGTTCGAGTTATCTCGTGAAGACATAAA GAAACTCAGGGAGAGGGTGCTTGCTAATTTAGTAAAGGAAGGTTCAAATGAAACACACCCAGTCCATTTATCTACCTTCGTGCTTGTATTAGCACACGGA TTTGGATGTATACTTAAGGCAATAGGGGTTCAAAGTAACAGAAAGGTTATTATGCGATTTGCAGCAGATTGTAGAGCCCGTTTGGACCCTCCAATGCATG AGAACTATTTTGGCAACTGTGTCAGTTCATGTGCTGCGTTTACAGAAGCAGAATCTCTTTTAGAGGAGAATGGATTTATGTATGTAGCAGAAATGCTAAG TGAGCTTGTCAAAACCTTAGAGAAAGGAGTCCTTGATGGCGCAAAGGAGAAGATGGCAAGGAACATGAAAGAAGCGGCAGGTGGTGCAGCACTACTTTCG GTTGCTGGGTCACACCAATTTGAGGTTTATGGAACTGATTTTGGGTGGGGGAAACCAGAGAAGGTGGAGATAACTTCCATAGATAGGACAGGAGCAATTT CTCTAGCGGAGAGCAAGGATGGAAATGGTGGAGTCGAGATTGGTTTGGTTTTGGAGAAGCATGAGATGGAAAAATTCACTTCTTTATTTGTTGATGGCCT TAAGAATCATTATTAG
AA sequence Show only first row Show all	>Potri.004G103300.1 pacid=42794703 polypeptide=Potri.004G103300.1.p locus=Potri.004G103300 ID=Potri.004G103300.1.v4.1 annot-version=v4.1 MEVENQVNTIDVCQVTPYFDSSESATELSLPLTFHDIMWLKFPPVERIFFYKHTESTPTFFNSVILPKLKHSLSHTLLHFLPLAGNLIWPPQAIKPIILY TPDDGVQLTVAESSADFHLLSGNEVHEAADSRPYIPELPVTDSKASVIALKITLFPNNGFCIGISAHHSVLDGKSSIMFIKAWAHFCKLGDEDKRQYPAL LTELTPVFDRIGIQDPEGLGMVYLNNWLELKWPGVDLNPRSLQLLPAIVVRSSSVRATFELSREDIKKLRERVLANLVKEGSNETHPVHLSTFVLVLAHG FGCILKAIGVQSNRKVIMRFAADCRARLDPPMHENYFGNCVSSCAAFTEAESLLEENGFMYVAEMLSELVKTLEKGVLDGAKEKMARNMKEAAGGAALLS VAGSHQFEVYGTDFGWGKPEKVEITSIDRTGAISLAESKDGNGGVEIGLVLEKHEMEKFTSLFVDGLKNHY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.004G103300 [exp]	0	1
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.004G103200 [exp]	1.41	0.9035
AT3G49950	GRAS		GRAS family transcription fact...		Potri.007G053500 [exp]	27.65	0.8474
AT3G51970		ATASAT1, ASAT1,...	ARABIDOPSIS THALIANA STEROL O-...		Potri.009G055000 [exp]	29.59	0.8082
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.004G103100 [exp]	33.31	0.8041
AT3G53420		PIP2;1, PIP2A	PLASMA MEMBRANE INTRINSIC PROT...		Potri.008G039600 [exp]	92.46	0.8195	Pt-MDPIP1.2
AT4G00400		AtGPAT8, GPAT8	glycerol-3-phosphate acyltrans...		Potri.014G085500 [exp]	97.32	0.8285
					Potri.011G046112 [exp]	108.47	0.8069
AT5G66450			Phosphatidic acid phosphatase ...		Potri.005G120400 [exp]	109.92	0.7898
AT2G33590			NAD(P)-binding Rossmann-fold s...		Potri.002G004100 [exp]	277.44	0.7894

Compare expression of checked genes

Potri.004G103300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.