Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26110 206 / 8e-59 DCP5 decapping 5 (.1.2) AT5G45330 123 / 1e-29 DCP5-L decapping 5-like (.1) AT4G19360 84 / 1e-18 SCD6 protein-related (.1.2) AT4G19260 49 / 3e-06 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G19340 49 / 3e-06 SCD6 protein-related (.1) AT4G19330 46 / 5e-05 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G111500 [exp] 759 / 0 AT1G26110 208 / 2e-59 decapping 5 (.1.2) Potri.010G131400 [exp] 337 / 5e-108 AT1G26110 494 / 1e-168 decapping 5 (.1.2) Potri.008G114900 [exp] 247 / 1e-73 AT1G26110 419 / 5e-139 decapping 5 (.1.2) Potri.004G235100 [exp] 154 / 1e-40 AT5G45330 229 / 7e-68 decapping 5-like (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017885 [exp] 244 / 3e-72 AT1G26110 473 / 5e-160 decapping 5 (.1.2) Lus10017884 [exp] 242 / 1e-71 AT1G26110 462 / 6e-156 decapping 5 (.1.2) Lus10035052 [exp] 236 / 3e-69 AT5G45330 422 / 4e-140 decapping 5-like (.1) Lus10035051 [exp] 218 / 5e-63 AT1G26110 297 / 1e-92 decapping 5 (.1.2) Lus10034747 [exp] 139 / 5e-35 AT1G26110 229 / 5e-68 decapping 5 (.1.2) Lus10033287 [exp] 135 / 1e-33 AT1G26110 222 / 3e-65 decapping 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09532 [poplar] [flax] FDF FDF domain
Representative CDS sequence Show only first row Show all	>Potri.004G104000.2 pacid=42794387 polypeptide=Potri.004G104000.2.p locus=Potri.004G104000 ID=Potri.004G104000.2.v4.1 annot-version=v4.1 ATGGCAGCTGCAACAGCAGAGGCAGCCAGATCTTCTTCTTCTTCTTCTTCTACAGGTAGTGGTGGTAGTGGTGGGTCATCAGCAGATTCCTATGTAGGTA GCTTGATTAGCTTGACTTCAAAGTCTGAGATTCGTTATGAAGGCGTTCTTTTCAACATCAACACTCAAGAATCCACCATCGGCTTAAGAAATGTAAGATC GTTTGGAACGGAAGGGCGGAAAAAGGATGGCCTGCAAGTTCCACCAAGCGATAAAATTTATGAGTTCATTCTCTTCCGAGGAACTGATATCAAGGATTTG CAGGTCAAGTCTTCTCCACCTGTTCAGACTGCAACACCCGTGCACAATGATCCTGCAATCATCCAGTCTCAGTATCCTCAAGCAGCAACTGCATCCATGA ATTTGCCTTCTTCTGGTAATGGATCTCTAACAGATCCAAGTTCCCATGCTTCATCCAATGGTCTTCCCAGGCCAACATTTCAAGGCAGTCTTCCCCAATA TCAGCCTGATGCGAGTTTAGAATCATGGGGTCCATCACATCTCCTTCCAACCACAAATGGTAGTGGGCTTGCCATGCCAATGTATTGGCAGGGATACTAT GGGCCCTCAAATGGAGTTCAGGCCCCACAGCAAGCTTTGCTTCGACCCCCACCTGGCTTGTCAATGCCACCTTCCATGATGCAATCTGTGCAGTATCCTG CCATGAATGCATCCAACACTTCAGCTTCTCCATTGTCAGAAAGCCCCCCTCTGTTGCCACCATTTAGTACAAGCACCTTAAATTTGCAGACTTCTACAAT TCCTTCTTCACGGTCTTCTGCAATGGTTTCAGACTCTACAAATTTAACTCCTGATAGGGTTTCTACTCAAACACTTCCTAGTAACTTGCCATTGGCATCC CCATTGACTATTGCTGTAGATAAAATTGCTATTGCATCACCAGGTTCTTACCTGCCCAAGACAGTCCCAGATCCAATAATGCCTTTTAAAAGAATGTCTG AACCTCCATCCTCCATCATGAGGACATCAAGTTCAGTTTTGAACGAGGGAAAAACACCTCTGGTGACACCGGGCCAACTTTCGCAGCCTGGCCCTCCCAT TGTTCCCTCACTGCAGTCTTCACAGATAGCTCAAAAGGATGTCGAGGTGGTGCAGGTATCATCACCAGAATTGTCAGCATTGCCACCAACAACAGCTGCA GCAGAAGTGCAGAAACCCATATTACCTCTACCTTCACAACCTGAACATAAGGTATATGGAGCGCCTATGTACACTTATCATACTAGTAGAGGAGGACGTG GAAGGGGGAGAGAAAATGAGATTTCACGTTCTGCTACCAGATTCGAGGAGGATTTTGATTTTACAGCAATGAATGAGAAATTCAATAAGGACGAAGTATG GGGTCACCTTGGTAAGAGTCACAAAGCTCAAGACAGGGATGATTTGCTAGATGAAGATGATGTTGGATCATCGAAACTTGAGACCAAGCCTGTTTATGTG AAGGATGACTTTTTTGATTCCATATCATGTGATGCTCTTGATGGTGGATCACGTAATGGGAGAGCTAGATTTTCCCAGCAGTCGAGAAGAGATACTGACA CATTTGTTAATTTCTCCCACCATTGGGGTGGTCGAGGAGGTTGGGGACCTGGCCGAGGTGGTCGATCACGTGGTGGTTATTATGGAAGAGGCTATGGTTA TGCTGGTCGAGGTTATGGCATGTCACACGGTTCCTTCTAA
AA sequence Show only first row Show all	>Potri.004G104000.2 pacid=42794387 polypeptide=Potri.004G104000.2.p locus=Potri.004G104000 ID=Potri.004G104000.2.v4.1 annot-version=v4.1 MAAATAEAARSSSSSSSTGSGGSGGSSADSYVGSLISLTSKSEIRYEGVLFNINTQESTIGLRNVRSFGTEGRKKDGLQVPPSDKIYEFILFRGTDIKDL QVKSSPPVQTATPVHNDPAIIQSQYPQAATASMNLPSSGNGSLTDPSSHASSNGLPRPTFQGSLPQYQPDASLESWGPSHLLPTTNGSGLAMPMYWQGYY GPSNGVQAPQQALLRPPPGLSMPPSMMQSVQYPAMNASNTSASPLSESPPLLPPFSTSTLNLQTSTIPSSRSSAMVSDSTNLTPDRVSTQTLPSNLPLAS PLTIAVDKIAIASPGSYLPKTVPDPIMPFKRMSEPPSSIMRTSSSVLNEGKTPLVTPGQLSQPGPPIVPSLQSSQIAQKDVEVVQVSSPELSALPPTTAA AEVQKPILPLPSQPEHKVYGAPMYTYHTSRGGRGRGRENEISRSATRFEEDFDFTAMNEKFNKDEVWGHLGKSHKAQDRDDLLDEDDVGSSKLETKPVYV KDDFFDSISCDALDGGSRNGRARFSQQSRRDTDTFVNFSHHWGGRGGWGPGRGGRSRGGYYGRGYGYAGRGYGMSHGSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26110		DCP5	decapping 5 (.1.2)		Potri.004G104000 [exp]	0	1
AT1G71310		RAD52-1B.2, RAD...	radiation sensitive 51-1, coba...		Potri.019G068500 [exp]	7.00	0.7247
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Potri.011G040900 [exp]	8.48	0.6501
AT4G34215			Domain of unknown function (DU...		Potri.009G096400 [exp]	14.96	0.7246
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Potri.002G014100 [exp]	17.57	0.7213
AT3G03773			HSP20-like chaperones superfam...		Potri.013G062600 [exp]	26.49	0.6416
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Potri.009G027000 [exp]	27.12	0.6705
AT3G03680			C2 calcium/lipid-binding plant...		Potri.013G066400 [exp]	27.78	0.6967
AT1G68760		ATNUDX1, ATNUDT...	NUDIX HYDROLASE 1, ARABIDOPSIS...		Potri.008G114300 [exp]	33.13	0.6571
AT5G19440			NAD(P)-binding Rossmann-fold s...		Potri.009G057600 [exp]	33.98	0.6525	CCRL2,CCR.9
AT2G44100		AT-GDI1, ATGDI1	guanosine nucleotide diphospha...		Potri.007G146600 [exp]	38.98	0.5970	GDI.2

Compare expression of checked genes

Potri.004G104000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.