Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79000 854 / 0 ATHAC1, ATHPCAT2, PCAT2, HAC1 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) AT1G16710 850 / 0 HAC12 histone acetyltransferase of the CBP family 12 (.1.2) AT3G12980 805 / 0 HAC5 ,ATHPCAT4 histone acetyltransferase of the CBP family 5 (.1) AT1G55970 726 / 0 HAG4, HAG04, HAC6, HAC04, HAC4 ,ATHPCAT2 HISTONE ACETYLTRANSFERASE OF THE GNAT/MYST SUPERFAMILY 4, HISTONE ACETYLTRANSFERASE OF THE GNAT/MYST SUPERFAMILY 04, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 6, histone acetyltransferase of the CBP family 4 (.1) AT1G67220 650 / 0 HAC02, HAC2 ,ATHPCAT1 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 1, histone acetyltransferase of the CBP family 2 (.1) AT5G67480 61 / 3e-09 ATBT4, BT4 BTB and TAZ domain protein 4 (.1.2) AT4G37610 53 / 1e-06 BT5 BTB and TAZ domain protein 5 (.1) AT5G63160 45 / 0.0004 BT1 BTB and TAZ domain protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G003400 [exp] 861 / 0 AT1G79000 1847 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Potri.014G000500 [exp] 852 / 0 AT1G79000 1829 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Potri.007G140400 [exp] 60 / 9e-09 AT1G05690 407 / 3e-141 BTB and TAZ domain protein 3 (.1) Potri.015G087700 [exp] 58 / 2e-08 AT5G63160 404 / 8e-141 BTB and TAZ domain protein 1 (.1) Potri.017G009700 [exp] 58 / 3e-08 AT1G05690 451 / 9e-159 BTB and TAZ domain protein 3 (.1) Potri.007G055100 [exp] 56 / 1e-07 AT5G67480 438 / 2e-153 BTB and TAZ domain protein 4 (.1.2) Potri.012G091400 [exp] 49 / 2e-05 AT5G63160 404 / 7e-141 BTB and TAZ domain protein 1 (.1) Potri.017G101100 [exp] 45 / 0.0006 AT3G02260 6576 / 0.0 UMBRELLA 1, TRANSPORT INHIBITOR RESPONSE 3, LOW PHOSPHATE-RESISTANT ROOT 1, DARK OVER-EXPRESSION OF CAB 1, CORYMBOSA1, ATTENUATED SHADE AVOIDANCE 1, auxin transport protein (BIG) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033319 [exp] 851 / 0 AT1G79000 1952 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Lus10033321 [exp] 837 / 0 AT1G79000 1965 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Lus10034780 [exp] 837 / 0 AT1G79000 1715 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Lus10011523 [exp] 59 / 2e-08 AT5G67480 482 / 6e-171 BTB and TAZ domain protein 4 (.1.2) Lus10019299 [exp] 59 / 2e-08 AT5G67480 487 / 7e-173 BTB and TAZ domain protein 4 (.1.2) Lus10018087 [exp] 57 / 6e-08 AT3G48360 388 / 1e-134 BTB and TAZ domain protein 2 (.1) Lus10042082 [exp] 57 / 6e-08 AT3G48360 388 / 1e-134 BTB and TAZ domain protein 2 (.1) Lus10013670 [exp] 51 / 4e-06 AT3G48360 371 / 6e-128 BTB and TAZ domain protein 2 (.1) Lus10033038 [exp] 45 / 0.0002 AT5G63160 184 / 5e-57 BTB and TAZ domain protein 1 (.1) Lus10027805 [exp] 44 / 0.0006 AT5G05610 320 / 6e-111 alfin-like 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02135 [poplar] [flax] zf-TAZ TAZ zinc finger CL0257 [poplar] [flax] Acetyltrans PF08214 [poplar] [flax] HAT_KAT11 Histone acetylation protein
Representative CDS sequence Show only first row Show all	>Potri.004G104201.1 pacid=42796251 polypeptide=Potri.004G104201.1.p locus=Potri.004G104201 ID=Potri.004G104201.1.v4.1 annot-version=v4.1 ATGTTGACAAGGAGATATAATTTGGAAGGCAGTGATTTTAATAACCTTAAAGCTCATTGCTTTTCCAATTCAAGTTCACTGAATAGTCTTTTGGATGATT GGCGGAAAGACCCTAACATTGATTTTTTTCGGGGTTTAGTTAGAAACAACATCGTTGAGATTCTCGAAAAGGATAGGAATTATCAATTGCAATTGCAAGG ATGGGATTATGTTAACGTGTTAGAGAACCAGTTGTTTTTTAAGGCTGTTTCTGAGGAGGAATATATCAATCTGGACACTCTGAGAAATAGATTACAAAGT TTAATCCTACAGCAACACAATGATGCAAATTGTGGTCAGCAAGGATCCAAATTGACAGCAATGCAAACTTTGGGTTTGACTCAGGGGTGCAGTTCAGATG AAGGAAACCCTATTTTCAATAGTTACCCCATCATTGGCAACAATAATTATAATCTGATGGGGGCTGAAGAACAGGATCATTTTGGCTTCCAAAAAGGATT ATTTAACAACGAATTTAATCTAGGAACCACAAGTATGTACAATGCTTTCACTGTGGCCTCAAAGCAGATCGGTAATGAGATGGATTCCTCTCCTGATATA AATTCGTCCATCACCACTATCTCTTGTGGTGATGGGTTTCCCGAAACTGGAACTTTTGACAGTGGACCAGTTTTTTCTCAAGGAGATCATCCATATCATC TTGAGGCCTTCAAAGACATTTTTCAGCAGCAACATTTTGATCAAAGCAACTTGAATTTGGTGAAACTTGGAAGCTTGACAAAAAATGAGAACCATTATGG TATGCCTTTGTCCACTTTAGGTGAATGCTTGGAGTATTCAAATTCAATTCTGCAGATCCCAGATTACTCTGGAGTCTCAAGCATTCTACCAAGTTCCAGC ACAAGGTTTGGCATAACAAATTCAACTCCTGATAAGCTACTGGAATCTAGAGCACAAGTATTAGAACAGACCCAGCAGCAGTCTTGTCAGTTATATGGAC AGTTTAATAAGGCATTGGAGGTCAAAGTACCAAGTCACTTAAAGGATCACAATAAGTCTTGCAGGCCAACATCTGGACATAAATCTATGCATTCTCAGCT CCCGCTCCCTTCAGAACAATCACACGGGGTTCGTGTGCCTTCAAAAAGTTCTGCACCTCTTCAAAAAGTGGCAAATTTAAATAACCTGCCATTTTTTTCT TCAAGAGAAAAGGTCTTAGCTGCTTATGTCAATTCCAAGAGATCAACGATCCCAATGGTGGACTGCCTAGATTCTTTCCTTAAGCATTTCCATTCAACAG TGTGTGACAATAGCAAGTGCTATTGTGAAAGTCTTCGCCCACTGTTATTGCATTTTGATAACTGCCTCCAAACTGATTGCCTTGTATGTGCTCCTAGCCG AATTCTGTGTAAAACTGATAAACTTGGTCAGAACTCTAAAGAGGTGAAGAGTGGTCATAAACGGGAGATCATTGATACAGATTCTAGTGGTTATGGATCT TGCTGTTCAGGAGACAAAATGCCTCCTTCAAAGTGTCAGAAGATGGAAAAATATTCTTATTACTTTTCATCTGGAGATGGAATCGCATCTGTGGTTGCTC CATTCTTGGTTCAATCTGATGGTCTTGGAGGACCCCTGCCATTGAAGCAATTGCCTGAATCTCCTGTATCTATTAATTCTGAGTTTTTTGGGGTGAATAA TGAATCACTGATGAATTCCATGGAAAATCCTACAAGCTCTGATCAGATCAGGAGCAAAGCTGCAGATAGTTATCCCAGATTGATTTGTGAGAGTGTTTCT GCTCCTTTTAAGGAGCACATTGTTGGTTGTAGTTCAGGAGAGATGGACTCCAGAAGTTCTAGTGGAGTTGCAGACGTTATGAAAGGTGACTGCAACCAAT TGATGAATAATTGTATGCCTATTGTCTCTGAAGAGGTTGGCGCTGCTTTTAACAAGGAGGCGATCCAAGTCATATCTAAATTTCATTTAGCCAAACCAGC TATAGAGCATGAGCTAAATGCAACAGTTGCTGAACATGAAGATGGAATGAAATCAGAAAGTTCAAAGATGAGAGGTGCTTCCTTAATTGATTTTTTCACA CCAGAACAGATAGAAGGACACATGTCCAGTCTTGAGCAGTCGATGTGCCAGAGAAAATCAAATGAAGAAGACAAAATAATAAATCATGTCAACGAGAATC GATGCCAGTTATGTGCAGAAGATAAGCTTTGGTTTGCCCCAGTGCCTATATATTGCTCGTGTTGTGGTGCTCGTATCAAGCGGGGGGTGATTTATTACAC CTCATCAGATGAAAATGGCACGCAGCCTTGCTTTTGTTCCTTATGCTTTAAGAGTTCTCCACCTAAGAAGATCACATTCTATGGAATTACCATTCTCAAG GAAAAGCTTCACAAAAGAAAGAATGACGAGGCAACTGACGAACCCTGGGTCGAGTGTGATAAATGTAAAAGGTGGCAACACCAGATATGTGCTCTGTTCA ACGATAAAAGAGATATGGAAGGAAAAGCTGAGTACATCTGTCCCAAATGCTGCTTGAAAGAAATGAAAAGCGAGGAGTACATGCCATCAACTAAGGCTGC TATTTTTGGTGCAAAAGATCTGCCTCGTACCAACTTGAGTGATTTCATAGAAGAAAGACTTTTTAGGCGTCTTAATCAAGAGAGAGAAGAAAGAGCAAAG TTTATGGGAATGAACATTGATGAGGTTCCAGAAGCTGAAGATCTTGTTCTAAGAGTGGTGCTATCTGTTAACAAACAGTTGAAAGTGAAAGAGAAGTTTC TGGAAATCTTCCATGGTGAGAACTACCCTGCTGAATTTCCCTACAGATCAAAGGTGATTCTTTTGTTCCAGAGGATTGGAGGAGTGGATGTTTGCCTTTT TGGCCTTTATGTCCAGGAGTTTGGCTCAGAATGCAGTCAGCCAAACCAACGCAGTGTTTATATTTCGTATCTTGATTCTGTCAAGTACTTCAGGCCGGAG ACAGAAACTTCAACTGGAGAAGCTCTTCGTACATTTGTTTACCATGAAATATTGATAGGGTACCTTGAATACTGCAAGAAACGAGGTTTTGCAACCTGCT ATTTATGGGCCTGTCCTCCTATAAAGGGAGAAGATTATATCTTATATTGCCATCCAGAGAACCAGAAGACTCCAAAGTCTGATAAGCTGCGACAATGGTA TCATTTGATGTTAAGAAAAGCAGCCAAAGAAAATATTGTGGTCAATTGTACTAATTTATATGACCACTTCTTTGTCCCTACTGGACATTTTTACTCGAAG ATAACAGCAGCTCGTTTGCCTTACTTTGATGGTTGCTACTGGTATGATGCTGCGGAGGATATCCTCAAGAACATTGAACAGAAAACTGGAGTATATGCAG AGAGGAAGGTGAAGAAAGTAATGACAAAAAGAACTCTAAAAGCCATGGGGCACACAGAGTCCTCTGGTGGTAACACCAAAGCTATTCTAGTAACAAATCA TCTGAGGGGTGGTCCCATGTGTGGTCGCAAGGAGGACTTCATGGTTGTTCATTTACAACATGTATGCACTCATTGTCATGAAGTGATGTTATCTGGAAGC CGATGGTTTTGCCGACAGTGCAAAAATTTTCAGCTATGTGAAAGATGCCATGTTGTAGAGAAAAACCTCAATGGGGAGGACTCGCACTCCTTAAATAACA AGGAAAAACATGTACTCTTTAAGGTTATGGTGAAGGGGATACCGTCCGATACTGAGGATAATGATGCTATTTTAGAAAACTGGCATTTCGATAATAGACA TACTTTCTTGGGTCTTTGTCAGAAGAATCATTATCAGTTTGATACGCTTCGCCGAGCCAAGCATTCATCAATGATGATCCTGCATAATCTTCATAATCCA ACACTGCCAGCAGCTGGGACAATGTGCAAAATTTGTCATAAGGATACTGATACACTGGATAGAGATGTCTGTGCTGCGTGCTATCACAAGAAAGACAGTT CTTTGCATGTCTATAAGTTGAATCAATGCTCTCCAGCAGCTAATTATGGAACTGAGAATGTAGATGCTCATCAAGAAGCACTTCAGCTGAAGGAACAAAA TCTTTCTAATTTGGTGGCACAGCAACAAAAGGAACTGCTAAATCTTTTAATGCATGCCACTCATTGTCGAGCAACAAGTAGTGACCCCTGCTCTTACCCA AAATGCCTCCAAATTAAAAGGTTGTTCTGCCATGCAAGGAAGTGCAGCATTCGGTCCTTTGGGGGCTGTCAACACTGTCAGAAGGTATGGTACTTGTTGA AGCTACATGCGGGAATTTGCAGACAAACAGATTGCCGTGTACCACGCTGCATAGATCTAAAAAACCACATGGAGCTGGAGCCTGGAGGATGA
AA sequence Show only first row Show all	>Potri.004G104201.1 pacid=42796251 polypeptide=Potri.004G104201.1.p locus=Potri.004G104201 ID=Potri.004G104201.1.v4.1 annot-version=v4.1 MLTRRYNLEGSDFNNLKAHCFSNSSSLNSLLDDWRKDPNIDFFRGLVRNNIVEILEKDRNYQLQLQGWDYVNVLENQLFFKAVSEEEYINLDTLRNRLQS LILQQHNDANCGQQGSKLTAMQTLGLTQGCSSDEGNPIFNSYPIIGNNNYNLMGAEEQDHFGFQKGLFNNEFNLGTTSMYNAFTVASKQIGNEMDSSPDI NSSITTISCGDGFPETGTFDSGPVFSQGDHPYHLEAFKDIFQQQHFDQSNLNLVKLGSLTKNENHYGMPLSTLGECLEYSNSILQIPDYSGVSSILPSSS TRFGITNSTPDKLLESRAQVLEQTQQQSCQLYGQFNKALEVKVPSHLKDHNKSCRPTSGHKSMHSQLPLPSEQSHGVRVPSKSSAPLQKVANLNNLPFFS SREKVLAAYVNSKRSTIPMVDCLDSFLKHFHSTVCDNSKCYCESLRPLLLHFDNCLQTDCLVCAPSRILCKTDKLGQNSKEVKSGHKREIIDTDSSGYGS CCSGDKMPPSKCQKMEKYSYYFSSGDGIASVVAPFLVQSDGLGGPLPLKQLPESPVSINSEFFGVNNESLMNSMENPTSSDQIRSKAADSYPRLICESVS APFKEHIVGCSSGEMDSRSSSGVADVMKGDCNQLMNNCMPIVSEEVGAAFNKEAIQVISKFHLAKPAIEHELNATVAEHEDGMKSESSKMRGASLIDFFT PEQIEGHMSSLEQSMCQRKSNEEDKIINHVNENRCQLCAEDKLWFAPVPIYCSCCGARIKRGVIYYTSSDENGTQPCFCSLCFKSSPPKKITFYGITILK EKLHKRKNDEATDEPWVECDKCKRWQHQICALFNDKRDMEGKAEYICPKCCLKEMKSEEYMPSTKAAIFGAKDLPRTNLSDFIEERLFRRLNQEREERAK FMGMNIDEVPEAEDLVLRVVLSVNKQLKVKEKFLEIFHGENYPAEFPYRSKVILLFQRIGGVDVCLFGLYVQEFGSECSQPNQRSVYISYLDSVKYFRPE TETSTGEALRTFVYHEILIGYLEYCKKRGFATCYLWACPPIKGEDYILYCHPENQKTPKSDKLRQWYHLMLRKAAKENIVVNCTNLYDHFFVPTGHFYSK ITAARLPYFDGCYWYDAAEDILKNIEQKTGVYAERKVKKVMTKRTLKAMGHTESSGGNTKAILVTNHLRGGPMCGRKEDFMVVHLQHVCTHCHEVMLSGS RWFCRQCKNFQLCERCHVVEKNLNGEDSHSLNNKEKHVLFKVMVKGIPSDTEDNDAILENWHFDNRHTFLGLCQKNHYQFDTLRRAKHSSMMILHNLHNP TLPAAGTMCKICHKDTDTLDRDVCAACYHKKDSSLHVYKLNQCSPAANYGTENVDAHQEALQLKEQNLSNLVAQQQKELLNLLMHATHCRATSSDPCSYP KCLQIKRLFCHARKCSIRSFGGCQHCQKVWYLLKLHAGICRQTDCRVPRCIDLKNHMELEPGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.004G104201 [exp]	0	1
AT2G47410			WD40/YVTN repeat-like-containi...		Potri.014G121100 [exp]	2.44	0.8634
AT3G10390		FLD	FLOWERING LOCUS D, Flavin cont...		Potri.008G035200 [exp]	3.87	0.8520
AT3G19510	HD	HAT3.1	Homeodomain-like protein with ...		Potri.001G298400 [exp]	4.58	0.8025
AT3G17850			Protein kinase superfamily pro...		Potri.015G035600 [exp]	7.41	0.8185
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Potri.007G066400 [exp]	7.74	0.8402	Pt-ABA3.1
AT2G39580			unknown protein		Potri.008G052500 [exp]	8.00	0.8368
AT3G19190		ATATG2	autophagy 2 (.1)		Potri.009G102900 [exp]	8.71	0.8423
AT5G22450			unknown protein		Potri.004G203500 [exp]	10.58	0.8377
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Potri.003G220800 [exp]	10.72	0.8418
AT1G17450			B-block binding subunit of TFI...		Potri.003G064000 [exp]	11.48	0.8154

Compare expression of checked genes

Potri.004G104201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.