Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38600 404 / 3e-134 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.1) AT1G67210 367 / 1e-121 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.1), Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G111300 [exp] 876 / 0 AT5G38600 400 / 4e-133 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.1) Potri.011G047600 [exp] 45 / 0.0002 AT4G21660 737 / 0.0 proline-rich spliceosome-associated (PSP) family protein (.1), proline-rich spliceosome-associated (PSP) family protein (.2) Potri.004G039000 [exp] 44 / 0.0003 AT4G21660 740 / 0.0 proline-rich spliceosome-associated (PSP) family protein (.1), proline-rich spliceosome-associated (PSP) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003067 [exp] 482 / 1e-163 AT5G38600 342 / 5e-111 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.1) Lus10034080 [exp] 383 / 1e-122 AT5G38600 280 / 1e-86 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.1) Lus10011207 [exp] 45 / 0.0002 AT4G21660 756 / 0.0 proline-rich spliceosome-associated (PSP) family protein (.1), proline-rich spliceosome-associated (PSP) family protein (.2) Lus10018475 [exp] 44 / 0.0003 AT4G21660 756 / 0.0 proline-rich spliceosome-associated (PSP) family protein (.1), proline-rich spliceosome-associated (PSP) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04046 [poplar] [flax] PSP PSP
Representative CDS sequence Show only first row Show all	>Potri.004G104400.3 pacid=42796207 polypeptide=Potri.004G104400.3.p locus=Potri.004G104400 ID=Potri.004G104400.3.v4.1 annot-version=v4.1 ATGGGGACTGGGAATGATGAGCTTTTGAAATCTGATTTAGGGCTAAGTGATTCTCACTCCCAACTAGGTAGTAATGAGACTAAAGAAAGTAAGGATGACG AGGAGAGTGTGGAGCTCAATGAAGGTGCTGTTGGAAATGATGAACGAATGAAAAATGGGGAGAGTGTGGAGCTCAATGAAGGTGCTGTTGGAAATGATGA ACGAATGAAAAATGGGGAGAGTGTGGAGCTCAATGAAGGTGCTGTTGGAAACAATGAAGGTACAAAAAATGGGGAGGGTTTTGAGCTCAATGTAGGTGTT ATTGGAAATGATGAAGTTACAGTCGATCCAGGGTATTCTGCGCTTAAAGTAGGTAATACTGGAACTGAAGAAGCTGCAACAGATCAGAGTAATTTGGTGC TTGAGGAACGTGGCATTGGATCTGAAGAAGTCCACTTTGCAGTGGAAACAGAAGTTGACATGGATTTGGTTGATTCGCCTGTTAGGCAAGTGAATATTGA AGTGGTTGATGCTGTTATAGTTTCTAAGAAACCAAATATTTCAAGCATCACAGGGAATGTTGAGGATTGTTTCCTTGATACACAAAATAAAAGTCTTATC CAGCAAGAGAAGGTTGATGGCAGTCATGTATCAGGTGTTAAGAGAAAAAGGATAACATATAATGAAGAGCAACCTTCAGTGCATGTCATGTATAACTCCT TAACAAGAGCTAGCAAGAAAAAGCTTGAGGAACTGTTACAACAGTGGTCAGAGTGGCATGCTCAACAGAACTCTTCGTCTCATGATTCTGACGAGATGCT ACAATCTGGTGAAGACACTTACTTTCCCGCTTTACGTATTGGCATGGTGAAGTCCTCTGCAGTGACCTTTTGGATTGAAAACCAAACAAGGAAACAGCAG GACAATGCCATAATTCCTCTGCAAAGTAATTATGTGCCTCTGTATGATCGTGGATATGCATTGGGTTTGACTTCAGCAGATGGTCCAATTAACATCGAAA GAGGCTTGGAGATAGTAGGTGATGCTGCACGTTGTTATAACTGTGCTTCGTACAACCACTCTTTGAAGGAATGCCCTAAACCTCGTGATAATGCTGCTGT TAATAATGCTCGCAAACAACACAAGTTCAAGCGAAATCAGAATTCTAGTTCCCGCAATCCAACACGCTATTATCAGAGCTCTTCAGGTGGAAAGTATGAT GGTTTGAAGCCAGGTTCTCTTGACACTGAAACACAAAAACTTCTAGGTCTTGGGGAACTTGATCCTCCACCATGGCTTAACAGAATGCAAGAGCTGGGAT ACCCACCAGGATATCTAGATCCCGATGACGAGGACCAGCCATCAGGGATCACAATATTTGCCGATGGGGATGTCAACGAGGAACAGGAAGATGGGGAGAT TACGGAAACAGACCCACCTCCTGAACCACAGAGGAAAATGTCAGTTGAATTTCCTGGAATAAATGCGGCAATCCCAGAAAATGCAGATCAAAGACTCTGG GAAGTTGGGCCTACAAGTTCTGATCCATGGAGGCACCGATCGCAGCATAGATTGAAATATTCTTCAGAAGCTACAGGTAGATGGCATCATCACGAGCAAA GACAGTATAGGGATGATGGGCCTCCAGGTGTTGATTCGGTGTTTAGCCCATCCATGTCTAGTTACCCTCCAAGGTATGGTCATTATGATTCTAGTTACAG TTCTGACAGCCCAAGAGATCTGACTCCTGCCTTTGGGAGGTCCAATTCTGATAGAGGAAGGAGCTCTTTGGTACATGAAGATTTTGTAAGCCATGGTTCC ACGTCAAACTCATCCTTAAGAAAACGTTCTTCGCCACAGGATATCGGCTCAGCGAGGTACAGGACTGATAACAGCCCGGATGACTATGACACGGATTATT CATATCGGGATTATTCATTCGATCGCCATCGCCATCGTAGCAGGCGGTAA
AA sequence Show only first row Show all	>Potri.004G104400.3 pacid=42796207 polypeptide=Potri.004G104400.3.p locus=Potri.004G104400 ID=Potri.004G104400.3.v4.1 annot-version=v4.1 MGTGNDELLKSDLGLSDSHSQLGSNETKESKDDEESVELNEGAVGNDERMKNGESVELNEGAVGNDERMKNGESVELNEGAVGNNEGTKNGEGFELNVGV IGNDEVTVDPGYSALKVGNTGTEEAATDQSNLVLEERGIGSEEVHFAVETEVDMDLVDSPVRQVNIEVVDAVIVSKKPNISSITGNVEDCFLDTQNKSLI QQEKVDGSHVSGVKRKRITYNEEQPSVHVMYNSLTRASKKKLEELLQQWSEWHAQQNSSSHDSDEMLQSGEDTYFPALRIGMVKSSAVTFWIENQTRKQQ DNAIIPLQSNYVPLYDRGYALGLTSADGPINIERGLEIVGDAARCYNCASYNHSLKECPKPRDNAAVNNARKQHKFKRNQNSSSRNPTRYYQSSSGGKYD GLKPGSLDTETQKLLGLGELDPPPWLNRMQELGYPPGYLDPDDEDQPSGITIFADGDVNEEQEDGEITETDPPPEPQRKMSVEFPGINAAIPENADQRLW EVGPTSSDPWRHRSQHRLKYSSEATGRWHHHEQRQYRDDGPPGVDSVFSPSMSSYPPRYGHYDSSYSSDSPRDLTPAFGRSNSDRGRSSLVHEDFVSHGS TSNSSLRKRSSPQDIGSARYRTDNSPDDYDTDYSYRDYSFDRHRHRSRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38600			Proline-rich spliceosome-assoc...		Potri.004G104400 [exp]	0	1
AT1G22940		THIE, TH-1, TH1	THIAMINEE, THIAMINE REQUIRING ...		Potri.003G015700 [exp]	2.23	0.8327	Pt-TH1.1
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Potri.004G112900 [exp]	5.91	0.7728
AT5G10900			Calcineurin-like metallo-phosp...		Potri.001G196600 [exp]	9.59	0.7828
AT3G15420			Transcription factor TFIIIC, t...		Potri.011G121800 [exp]	13.41	0.7476
AT2G39170			unknown protein		Potri.008G035000 [exp]	14.69	0.7345
AT1G52520	FAR1_related	FRS6	FAR1-related sequence 6 (.1)		Potri.006G256300 [exp]	16.79	0.8016
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Potri.013G004200 [exp]	19.49	0.7278
AT1G48540			Outer arm dynein light chain 1...		Potri.015G036300 [exp]	21.21	0.7661
AT1G48950			C3HC zinc finger-like (.1)		Potri.015G052400 [exp]	24.18	0.7534
AT1G55140			Ribonuclease III family protei...		Potri.003G038400 [exp]	27.12	0.7513

Compare expression of checked genes

Potri.004G104400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.