Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16020 518 / 2e-176 GEX3 gamete-expressed 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003058 [exp] 653 / 0 AT5G16020 506 / 2e-172 gamete-expressed 3 (.1) Lus10034090 [exp] 478 / 2e-160 AT5G16020 358 / 1e-114 gamete-expressed 3 (.1) Lus10017838 [exp] 239 / 7e-73 AT5G16020 201 / 3e-59 gamete-expressed 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G104500.1 pacid=42795031 polypeptide=Potri.004G104500.1.p locus=Potri.004G104500 ID=Potri.004G104500.1.v4.1 annot-version=v4.1 ATGGCAGTTGAAACTCTTCTCTTCTTGCTGCTAGTTATCGCTTCAGTTTTCACAGAATCACAAAATTACCCTCGTGAAGGGCCTTCAGTAAGAACTGATT TAAGGCTTTCAAGGCCTCTTATTGGAGAGGATGGAAGGATTTACATTTGTAGTGAAAAGACTTTGTATGCGTTTGAAAGTAATGGGTCTATTGCTTGGAC CTCATATTTGAGTTATGCTTGCAATGCAAGCATGGCTCCAGTTCATGGAACTGTAGGAAAGCTATATTTGGTTGCAGAGAGCAGAGTTTTGAGAATCAAT TTTAGTGATGTTAGATCTTCTCCACCAGCAGTAGAAGTTTTCTTTGGTCCAGAAAAAGGTCAAGCAGGAGCAGGCGATATCATCGGGCTTGCAGCGAGTA CATTGAGTTCGTCTGTATTTATCAATATTAAGAACCGAGGACTATTTGCTTATGAGATGCATGGGAAGCTACACTGGAGTGCTGGAGCTGTGCTTTACCA GTATGGATACAGTTTAGGTTGTAGAAAAGGTGTAAAAGATTGTTCTTTCAGTTCATCTCCTGTGGTTGATCGATGTGAGGCTAGTCTATATATTTCAAAT AATGCAGGAGAATTATATTCATTGTCTCTTCGTAGCCCTCACTTTAATTGGGTTCAGGATCTAAGCTCATTTGACAAAAACTTCACTGTTACACCTGGAA ACAATGGCCGGTTGTATGTGACAGTACCCCCACTGTCACTTGTGTTGACTCTAGATGTCTTGAAGGGTAATATTTTGTGGCAGACGAGTATTGGACCGTT AGGTTCAGCAGAATGCGAACCGGTTGTGGACTCCAATGGTTGGGTATCTATCGGTTCACTGGATGGATTCCTGTACTCAATCTCACCAACCGGAGCCCTA AAGAAATACTCAAAAGCATCTGAACAAGATTATGTTATTCAAGTAAGCCCACATTTAGATTGCTCCGGCAATGCTGTTTATATGTCCCAGACTGAGATGG AAGGAAAAGTTGTCCACACAGTTGGTGAATCTACTTGTGTCTCAGCAATGAAACCAAAAGGTGTACTGTTCACTATGTTGGTTCCAGCAACTGGTGTGAT CCACTGGTCTGAAAGCTATCCTGGTAAAGTCTCATCCATGCTTTCTCAAAGTGATCTGAAAAACTTTGTACTGGATGAGGGACTTCTTCTTTCTTTTATA GCTGCTTCAAGGACTGGCAAACCACTGCCTTGCCGTAGCAAACATCAGAAGCTTTTATCTACTTGCTCACAAGCAAGGCCCAGGCATCATAGTATCTACA CAGGTAATGAAAGGACAATACTGCTGTTCTTGTTACTTGAATCCATGCTCTTGGTAATTTTAGCTGGACTTGTACGATTCTGCTGCATATTTTGGACGAA AAAGAAGCTTCAAGATCAAGGCTTGGGAAGTTTCCTTGAAAAGAGACGTTCTCTCCAACTTAAGAAGAAAGAATTTGATAGGACAATCACGCAACTCGAG AAGAAGGCTGCAAACGAAGCAGTGGCTCATGAAGTCATTGAAGAAATAGGGGATTTGGTACGAGAAAGAGAGAGCATATCAAGGAAGCTCTCAACAACAT ACAGTTTAGGTAGGGATGGAAAGGGCTTGCGGTCAGAGTCTCTCCTTCCAGTATATGATGGGAAATCAAGGAGCTATTCTTTTCAGAGTGCAAGGAAAGA AAGCGTCACTATTTTTCACACACTAAGTAATACATCTTCTGGAGAAAGCAGCAAAGAGAAAGATTCTGACCGGGACTTTCACGAGGAGAACCAGTCCTCA GCTAAGGGAAAGGGAAAGGCAAGAGCACCTGTTGAAACAGAAAGTTCAAGTGATGATGATATCTTTGAGAAAGGCTACCATAGAAGTTCATCAGAGCCAA CATCAAGCTCAAAAAGGTATGCCAATCCATTTTTTATGGAGCAAGAGCTGACAGAAGAGGAGTTGAATGATGAGGGGAAAGTGGTGGAATCAGCAACAGG CAGTGGCAGAACTAGAAGCATGTGGTTAAAGAGAAGAAAGACGTTGTCTTCAACTAACTAG
AA sequence Show only first row Show all	>Potri.004G104500.1 pacid=42795031 polypeptide=Potri.004G104500.1.p locus=Potri.004G104500 ID=Potri.004G104500.1.v4.1 annot-version=v4.1 MAVETLLFLLLVIASVFTESQNYPREGPSVRTDLRLSRPLIGEDGRIYICSEKTLYAFESNGSIAWTSYLSYACNASMAPVHGTVGKLYLVAESRVLRIN FSDVRSSPPAVEVFFGPEKGQAGAGDIIGLAASTLSSSVFINIKNRGLFAYEMHGKLHWSAGAVLYQYGYSLGCRKGVKDCSFSSSPVVDRCEASLYISN NAGELYSLSLRSPHFNWVQDLSSFDKNFTVTPGNNGRLYVTVPPLSLVLTLDVLKGNILWQTSIGPLGSAECEPVVDSNGWVSIGSLDGFLYSISPTGAL KKYSKASEQDYVIQVSPHLDCSGNAVYMSQTEMEGKVVHTVGESTCVSAMKPKGVLFTMLVPATGVIHWSESYPGKVSSMLSQSDLKNFVLDEGLLLSFI AASRTGKPLPCRSKHQKLLSTCSQARPRHHSIYTGNERTILLFLLLESMLLVILAGLVRFCCIFWTKKKLQDQGLGSFLEKRRSLQLKKKEFDRTITQLE KKAANEAVAHEVIEEIGDLVRERESISRKLSTTYSLGRDGKGLRSESLLPVYDGKSRSYSFQSARKESVTIFHTLSNTSSGESSKEKDSDRDFHEENQSS AKGKGKARAPVETESSSDDDIFEKGYHRSSSEPTSSSKRYANPFFMEQELTEEELNDEGKVVESATGSGRTRSMWLKRRKTLSSTN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16020		GEX3	gamete-expressed 3 (.1)		Potri.004G104500 [exp]	0	1
					Potri.001G293200 [exp]	3.74	0.8628
					Potri.012G109500 [exp]	4.89	0.8494
AT5G03970			F-box associated ubiquitinatio...		Potri.005G124500 [exp]	5.91	0.8437
					Potri.008G132650 [exp]	7.48	0.8166
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.014G106500 [exp]	8.00	0.8567	Pt-RCOMT1.3
AT1G05610		APS2	ADP-glucose pyrophosphorylase ...		Potri.007G146100 [exp]	17.49	0.8416
					Potri.001G444350 [exp]	18.16	0.8532
					Potri.010G190900 [exp]	22.58	0.8286
					Potri.012G141550 [exp]	26.49	0.7967
AT3G47370			Ribosomal protein S10p/S20e fa...		Potri.002G116900 [exp]	27.00	0.7515

Compare expression of checked genes

Potri.004G104500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.