Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15860 547 / 0 ICME, ATPCME Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) AT3G02410 535 / 0 ICME-LIKE2 Isoprenylcysteine methylesterase-like 2, alpha/beta-Hydrolases superfamily protein (.1.2) AT1G26120 510 / 7e-180 ICME-LIKE1 Isoprenylcysteine methylesterase-like 1, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G110700 [exp] 671 / 0 AT5G15860 541 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Potri.010G132200 [exp] 516 / 0 AT1G26120 578 / 0.0 Isoprenylcysteine methylesterase-like 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104300 [exp] 45 / 7e-05 AT3G48700 329 / 1e-112 carboxyesterase 13 (.1) Potri.009G104000 [exp] 44 / 0.0001 AT2G03550 327 / 8e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104100 [exp] 44 / 0.0001 AT2G03550 330 / 6e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G142400 [exp] 44 / 0.0001 AT2G03550 331 / 2e-113 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034083 [exp] 576 / 0 AT5G15860 569 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Lus10003065 [exp] 556 / 0 AT5G15860 554 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Lus10035064 [exp] 536 / 0 AT1G26120 613 / 0.0 Isoprenylcysteine methylesterase-like 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10017889 [exp] 532 / 0 AT1G26120 608 / 0.0 Isoprenylcysteine methylesterase-like 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10034399 [exp] 525 / 0 AT5G15860 561 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Lus10019156 [exp] 522 / 0 AT5G15860 558 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Lus10036168 [exp] 44 / 0.0001 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF07859 [poplar] [flax] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Potri.004G104800.4 pacid=42794015 polypeptide=Potri.004G104800.4.p locus=Potri.004G104800 ID=Potri.004G104800.4.v4.1 annot-version=v4.1 ATGACCTCATCACCGCCGGCTACCCTTTCTTCAAATCGCAACCGTTCATTTGGAACTGAAACTACAATAATGAGTTGTGACAACGATCAAACGGACGCCA AACCGCTGCTTTCTCAGGGTTCTAGTGTTAGTAGCGGTAGCTTTAATCAAATGCAGCGGCGACGAGTTTCCGGTAAGCTGGGTAAGCCGGGGAGGCAACA GTCGTTTAGTCGAGATATCGGTCACGCCGCCGCCGAGACCTACTTGCTCACTCGGCTTACCATCACTCTGCTCCGATATCTAGGGGTAGGCTACCGGTGG ATCACAAGATTAGCTGCTCTTGGCATTTATGCTGCTCTACTTATGCCGGGTTTTCTTCAAGTTGCATATTATTATTTCTTCTCAAGTCAGGTTCGACGAA GTATTGTTTATGGTGATCAACCCAGAAACAGGTTGGATTTGTATTTTCCAAAAAATTTAGATGGACCAAAGCCAGTCGTGGCATTTGTCACAGGAGGTGC CTGGATTATTGGGTATAAAGCATGGGGAAGTCTTCTAGGACAACAGTTGGCAGAAAGGGACATCATAGTGGCATGTATTGATTACAGAAATTTTCCCCAG GGAACCATTGGTGATATGGTAACAGATGCTTCTGAGGGGATCTCATTTATTTGCAACAACATTGCTGAATATGGAGGTGACCCTAACAGGATCTATCTAA TGGGACAATCAGCTGGTGCACACATTTCTGCTTGTGCCCTCTTGGACCAAGCGATCAGAGAAGCTAAGGGAGAGGAGAGCATCTCCTGGAGTGTCTCCCA GATAAAAGCATATTTTGGTTTATCTGGAGGGTACAATTTATGCAAATTAGTCGATCATTTCAACAACCGAGGCCTGTACCGTTCTCTTTTTCTAAGCATA ATGGAAGGTGAAGAATCCCTTAAACGTTTTTCTCCTGGAGTTAGAATAGAGGACCCAAGCAATAGAAATGCTGTTTCTCTTCTGCCTCCTGTTATTCTCT TTCACGGAACAGCAGATTATTCAATACCATCATTTGCCAGTAAAGATTTTGCAGCTGCTCTTCAAAGGTTAGGAGCACAAACTGAGCTGATTCTGTTTGA TGGGAAAACCCATTCAGACTTGTTTCTTCAAGATCCTCTAAGAGGTGGTAAAGATGACATGTTTGACCATCTGGTCGCTGTGATACATGCTGGTGATGAG GAAGCTCTTGCCAAGGATGCTATGGCACCTCCAAGAAGGCGCCTAGTTCCTGAGGTTTTGTTAAGAATGGCCAGTTATATCAGCCCATTCTAA
AA sequence Show only first row Show all	>Potri.004G104800.4 pacid=42794015 polypeptide=Potri.004G104800.4.p locus=Potri.004G104800 ID=Potri.004G104800.4.v4.1 annot-version=v4.1 MTSSPPATLSSNRNRSFGTETTIMSCDNDQTDAKPLLSQGSSVSSGSFNQMQRRRVSGKLGKPGRQQSFSRDIGHAAAETYLLTRLTITLLRYLGVGYRW ITRLAALGIYAALLMPGFLQVAYYYFFSSQVRRSIVYGDQPRNRLDLYFPKNLDGPKPVVAFVTGGAWIIGYKAWGSLLGQQLAERDIIVACIDYRNFPQ GTIGDMVTDASEGISFICNNIAEYGGDPNRIYLMGQSAGAHISACALLDQAIREAKGEESISWSVSQIKAYFGLSGGYNLCKLVDHFNNRGLYRSLFLSI MEGEESLKRFSPGVRIEDPSNRNAVSLLPPVILFHGTADYSIPSFASKDFAAALQRLGAQTELILFDGKTHSDLFLQDPLRGGKDDMFDHLVAVIHAGDE EALAKDAMAPPRRRLVPEVLLRMASYISPF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15860		ICME, ATPCME	Isoprenylcysteine methylestera...		Potri.004G104800 [exp]	0	1
AT5G14890			NHL domain-containing protein ...		Potri.003G101300 [exp]	9.89	0.8790
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Potri.009G061700 [exp]	14.17	0.8797	HF.2
AT1G48560			unknown protein		Potri.003G188600 [exp]	14.45	0.7806
AT1G28210		ATJ1	DNAJ heat shock family protein...		Potri.005G160200 [exp]	20.39	0.8478
AT5G20890			TCP-1/cpn60 chaperonin family ...		Potri.006G128600 [exp]	23.30	0.8768
AT5G41685			Mitochondrial outer membrane t...		Potri.018G145502 [exp]	33.91	0.7731
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Potri.001G254308 [exp]	34.05	0.8635
AT5G63830			HIT-type Zinc finger family pr...		Potri.001G085800 [exp]	34.92	0.8710
AT5G05800			unknown protein		Potri.001G238000 [exp]	38.60	0.8546
					Potri.007G117400 [exp]	43.06	0.8332

Compare expression of checked genes

Potri.004G104800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.