Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02420 513 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G110600 [exp] 588 / 0 AT3G02420 532 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034084 [exp] 516 / 0 AT3G02420 489 / 2e-174 unknown protein Lus10003064 [exp] 402 / 2e-139 AT3G02420 372 / 2e-127 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03661 [poplar] [flax] TMEM33_Pom33 Transmembrane protein 33/Nucleoporin POM33
Representative CDS sequence Show only first row Show all	>Potri.004G104900.1 pacid=42794115 polypeptide=Potri.004G104900.1.p locus=Potri.004G104900 ID=Potri.004G104900.1.v4.1 annot-version=v4.1 ATGGGACAAGAAACAGAGGATTCACAGAAGCCTAGGAGAATAGCGGCTGCTGCTTATGATTACGACAACGACCCTAGATGGGCTGATTACTGGTCCAATA TCCTCATCCCTCCTCACTTGTCTTCTCGCTCTGATGTTCTTGATCACTACAAGCGCAAGTTCTACCAACGCTACATCGACCCTGATCTAGTGGTGGAGGT GATGTCTACAAATGGTTCGTCTCAGTCAACAAACCCATCTGCATCATCCTCTTCATCATCACCCCCTTCATATGGTGAACCTCAAACACACAATACAGGG TCAACTGCTAGAGCCTCTGGACCATCAGCAACTGCAGGACAAAATCCAACCTCTGTCCACTGGTATCGACAAACAATACAGTTTTCTGTCAATGCTTGGG TTTTTGTTGTGGCTGTGCTTGCAATCATTCCCCTCGCACCTAAAAATCTTTCAAGTAGGGCATATCGACTGTCGCTTATTGGCACTGCATGCTCGTCTCT GTATTCCTTGTACACATTATATGGGAGACCTAGAGCATGGAACTTGCAGGGTATTCAAGTTTACTTGCAGTCAATAATTGCAACCAAAGATTTTATCTAC TTCATCTACTGCCTTACATTTGTCACTTCACATCTTTGCCTTAAAGTTGCTTTAATTCCCATTTTGTGCCGATCGCTGGAGCATGTTGCCAAATTCTTGA GGCGTAATTTCAGCCGTTCCACCTTGTACAGGAAGTACCTTGAAGACCCTTGTGTATGGGTGGAGTCCAACACAACTACCCTCAGCATTCTCTCCTCTCA TACTGAAATTGGGCTTGGCTTCCTGTTAATTGTCTCCTTGTTCTCGTGGCAACGCAACATAATACAAACATTCATGTACTGGCAGCTATTGAAGATCATG TATCATGCTCCTGTGACTGCTGGTTACCATCAGAGCGTGTGGGCTAAGATCGGAAGGACCATCAATCCTCTTATCCACCGTTACTGCCCATTCTTGAACA CTCCACTTTCTGCTGTTCAAAGATGGTGGCTGAGGTAA
AA sequence Show only first row Show all	>Potri.004G104900.1 pacid=42794115 polypeptide=Potri.004G104900.1.p locus=Potri.004G104900 ID=Potri.004G104900.1.v4.1 annot-version=v4.1 MGQETEDSQKPRRIAAAAYDYDNDPRWADYWSNILIPPHLSSRSDVLDHYKRKFYQRYIDPDLVVEVMSTNGSSQSTNPSASSSSSSPPSYGEPQTHNTG STARASGPSATAGQNPTSVHWYRQTIQFSVNAWVFVVAVLAIIPLAPKNLSSRAYRLSLIGTACSSLYSLYTLYGRPRAWNLQGIQVYLQSIIATKDFIY FIYCLTFVTSHLCLKVALIPILCRSLEHVAKFLRRNFSRSTLYRKYLEDPCVWVESNTTTLSILSSHTEIGLGFLLIVSLFSWQRNIIQTFMYWQLLKIM YHAPVTAGYHQSVWAKIGRTINPLIHRYCPFLNTPLSAVQRWWLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02420			unknown protein		Potri.004G104900 [exp]	0	1
AT1G75020		LPAT4	lysophosphatidyl acyltransfera...		Potri.014G040600 [exp]	10.39	0.8572
AT3G20970		ATNFU2, NFU4	ARABIDOPSIS THALIANA NFU DOMAI...		Potri.008G022000 [exp]	19.74	0.8505
AT5G38470		RAD23D	RADIATION SENSITIVE23D, Rad23 ...		Potri.010G126200 [exp]	27.01	0.7935
AT1G07510		FTSH10	FTSH protease 10 (.1)		Potri.009G033600 [exp]	28.39	0.8104
AT2G23310		ATRER1C1, ATRER...	Rer1 family protein (.1.2)		Potri.005G141700 [exp]	35.66	0.8019
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Potri.001G334700 [exp]	48.37	0.8163
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Potri.010G254500 [exp]	57.00	0.7782	ATFYPP3.1
AT1G11330			S-locus lectin protein kinase ...		Potri.001G412100 [exp]	69.19	0.8143
AT3G09180			unknown protein		Potri.016G070700 [exp]	100.91	0.7803
AT5G11970			Protein of unknown function (D...		Potri.003G043600 [exp]	109.94	0.7919

Compare expression of checked genes

Potri.004G104900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.