Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38560 649 / 0 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G68690 541 / 0 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT1G26150 538 / 0 ATPERK10 proline-rich extensin-like receptor kinase 10 (.1) AT1G70460 462 / 1e-153 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G23540 451 / 5e-149 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G10620 438 / 6e-144 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT1G70450 411 / 8e-138 Protein kinase superfamily protein (.1) AT3G24540 415 / 9e-138 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT2G18470 411 / 9e-135 AtPERK4, PERK4 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) AT1G52290 397 / 9e-131 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G110400 [exp] 875 / 0 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.010G132900 [exp] 567 / 0 AT1G26150 605 / 0.0 proline-rich extensin-like receptor kinase 10 (.1) Potri.008G111600 [exp] 558 / 0 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Potri.008G189700 [exp] 464 / 1e-153 AT1G23540 642 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Potri.005G124400 [exp] 414 / 3e-136 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.001G183000 [exp] 408 / 3e-134 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.007G027000 [exp] 402 / 5e-131 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.003G053301 [exp] 399 / 1e-130 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) Potri.009G115200 [exp] 389 / 7e-126 AT4G34440 575 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034082 [exp] 711 / 0 AT5G38560 700 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10003066 [exp] 707 / 0 AT5G38560 707 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10017898 [exp] 516 / 3e-174 AT1G68690 631 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Lus10035071 [exp] 469 / 5e-157 AT1G68690 570 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Lus10013014 [exp] 420 / 9e-141 AT1G23540 572 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10029151 [exp] 419 / 4e-140 AT1G23540 575 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10023645 [exp] 423 / 2e-138 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10011098 [exp] 420 / 9e-138 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10013013 [exp] 422 / 8e-137 AT1G70460 596 / 0.0 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) Lus10043219 [exp] 414 / 1e-135 AT3G24550 688 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.004G105200.2 pacid=42795395 polypeptide=Potri.004G105200.2.p locus=Potri.004G105200 ID=Potri.004G105200.2.v4.1 annot-version=v4.1 ATGGCTTCCCTAACACCTTCACCAGACTCTCCCCCCTCTCCAATACCAATCTCCACTTCACCACCATCTCCACCGTCAACACCGGATTCCACCACCAATT CACCCCCTCCCTCAACATCTCAGCCTGATCAGACCATTGACCCCCCATTGCCTTCAACACCATCTAACCCTGCAACCCCACCTCCTCAATCCCCACCACC AGCACCACCCGCTGCTTCCCCTCCAGCTCCACCACCACCATCACCAATAATTCCCTCAACACCTCCACCATTTCCCCCACCACCATCACCCCCGGCATCT CCACCACCAGCCCCTCCAGCTTTAACCCCTCCATCACCACCTACTGCGCCTCCCCCAGCTTCTACCACTGCACCACCCCCTCCACCACCGATAAGCACCT CCCCTCCTCCACGTGCCTCTCCAACGACTCCTGTAACCTCCCCACCTCCCCCTCAAGCTGTCTCCCCTTCCCCACCTCCTCCTGCAAATGACCCTATACC CCCTGCTACTAATTCGCCTCCTCCTCCAACAGTAAAGCCGCCTGAAAGCCCCCCTGCACTTCCAACAGTTCCTCCTCCACCACCTAGTTCTCAATCTGAT AGTCCTCCACCTACAACAAATTCTCCTCCTCCTCCAATATCCACATTGCAATCGCCGCCCCCATCAATTCCCTCGACCTCATCAACACCTCCTGCAATAT CGCCTCCTGCTCCTCCAGTCAATTCATCAGTGACAGGAAGTCCTACCCCACCCTTTCCTGCTATTCCAACAGAGAAACCAACTGCAAGAGCAACCAATGG AACTGATGTCTCCACAAATACCTCATCCACTGGTCCAGGGGGATTAAACAATGGAGGTGCAGTCACAATAGGCATTGTGGCTGGGTTTGTAGCACTCAGT CTTCTAGTTGTGGCTGTATGGTTTGCACAAAAGCGAAAGAGAAGACGAGGAGAAAATGTTGGTTACACTATCCCTTCGCCATTTGCCTCCTCACAAAATT CAGATTCAGTATTTCTAAAACCTTATCCTCCAGCTCCCCTGGTTGGCAGTCCTTCTGGCAGTGATTTCATGTATTCACCATCGGAGGCAGGTGTAGTAAA TAATTCAAGGCAATGGTTCACATATGAAGAACTAGTCCAAGCCACAAATGGGTTTTCGGCACAGAATCGTCTAGGTGAAGGTGGATTTGGTTGTGTATAC AAAGGTGTCCTTGTAGATGGAAGAGATGTTGCTGTAAAACAATTAAAGATTGGTGGTTCTCAAGGGGAGCGTGAATTCAGAGCAGAGGTTGAGATTATTA GTAGAGTGCATCATCGACATTTGGTTTCATTGGTGGGTTACTGTATATCTGAGCATCAAAGACTGCTTGTCTATGACTACCTTCCCAATGATACTCTTTA TCACCATTTGCACGGTGAAGGCAGACCATTTATGGATTGGGCAACAAGGGTCAGGGTTGCTGCTGGTGCAGCTCGTGGCATAGCTTATCTGCATGAAGAT TGCCATCCACGCATTATTCACAGGGATATCAAGTCATCTAACATCCTTCTCGATGAAAATTTTGAAGCTCAGGTTTCAGATTTTGGGCTTGCTAAGATAG CGCTGGAACTGGATTCAAATACTCATGTATCCACACGTGTGATGGGAACCTTTGGGTACATGGCTCCAGAGTATGCAACAAGTGGAAAGTTGACTGAAAA ATCTGATGTTTATTCCTATGGGGTTGTGCTGTTGGAGCTAATTACAGGCCGTAAGCCTGTGGATGCCTCTCAGCCACTGGGTGATGAAAGCCTCGTTGAA TGGGCTCGACCATTGCTTACTGATGCAATTGAAAATGAAGACTTTGAAGCATTGGCTGATTCAGGGCTGGAGAAGAACTATGTTCCAAGTGAAATGTTTC GGATGATTGAGGCAGCTGCAGCTTGTGTGCGTCATTCAGCTGCAAAAAGGCCGCGGATGAGTCAGGTGGTGAGAGCCTTGGACTTGTTAGATGAGTCATC GGATCTATCTAATGGAATGAAACCTGGTCAAAGTGAAATATTTGATTCAAGACAACACTCTGCGCAAATCAGAATGTTTCAGAGGTTGGCATTTGGTAGC CAAGAGTATAGTTCAGAATTTTTTGATCGCACTCAGAGTAGCTGGAGGAGTAGAGATCATGGGGATTCTGTTTAA
AA sequence Show only first row Show all	>Potri.004G105200.2 pacid=42795395 polypeptide=Potri.004G105200.2.p locus=Potri.004G105200 ID=Potri.004G105200.2.v4.1 annot-version=v4.1 MASLTPSPDSPPSPIPISTSPPSPPSTPDSTTNSPPPSTSQPDQTIDPPLPSTPSNPATPPPQSPPPAPPAASPPAPPPPSPIIPSTPPPFPPPPSPPAS PPPAPPALTPPSPPTAPPPASTTAPPPPPPISTSPPPRASPTTPVTSPPPPQAVSPSPPPPANDPIPPATNSPPPPTVKPPESPPALPTVPPPPPSSQSD SPPPTTNSPPPPISTLQSPPPSIPSTSSTPPAISPPAPPVNSSVTGSPTPPFPAIPTEKPTARATNGTDVSTNTSSTGPGGLNNGGAVTIGIVAGFVALS LLVVAVWFAQKRKRRRGENVGYTIPSPFASSQNSDSVFLKPYPPAPLVGSPSGSDFMYSPSEAGVVNNSRQWFTYEELVQATNGFSAQNRLGEGGFGCVY KGVLVDGRDVAVKQLKIGGSQGEREFRAEVEIISRVHHRHLVSLVGYCISEHQRLLVYDYLPNDTLYHHLHGEGRPFMDWATRVRVAAGAARGIAYLHED CHPRIIHRDIKSSNILLDENFEAQVSDFGLAKIALELDSNTHVSTRVMGTFGYMAPEYATSGKLTEKSDVYSYGVVLLELITGRKPVDASQPLGDESLVE WARPLLTDAIENEDFEALADSGLEKNYVPSEMFRMIEAAAACVRHSAAKRPRMSQVVRALDLLDESSDLSNGMKPGQSEIFDSRQHSAQIRMFQRLAFGS QEYSSEFFDRTQSSWRSRDHGDSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38560		AtPERK8	proline-rich extensin-like rec...		Potri.004G105200 [exp]	0	1
AT3G07400			lipase class 3 family protein ...		Potri.002G249400 [exp]	3.87	0.8667
AT1G79990			structural molecules (.1.2.3.4...		Potri.003G056100 [exp]	5.29	0.8933
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Potri.006G235132 [exp]	6.24	0.8598
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Potri.001G226904 [exp]	11.31	0.8631
AT5G43230			unknown protein		Potri.010G057700 [exp]	11.83	0.8337
AT5G01980			RING/U-box superfamily protein...		Potri.016G141600 [exp]	13.11	0.8760
AT1G67040			unknown protein		Potri.017G116000 [exp]	16.73	0.8616
AT3G11470			4'-phosphopantetheinyl transfe...		Potri.006G211300 [exp]	18.76	0.8574
					Potri.012G067350 [exp]	22.44	0.8621
					Potri.019G049901 [exp]	22.62	0.8090

Compare expression of checked genes

Potri.004G105200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.