Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15870 897 / 0 glycosyl hydrolase family 81 protein (.1) AT1G18310 765 / 0 glycosyl hydrolase family 81 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021987 [exp] 952 / 0 AT5G15870 949 / 0.0 glycosyl hydrolase family 81 protein (.1) Lus10042525 [exp] 400 / 1e-135 AT5G15870 367 / 2e-123 glycosyl hydrolase family 81 protein (.1) Lus10042526 [exp] 388 / 3e-128 AT5G15870 440 / 6e-149 glycosyl hydrolase family 81 protein (.1) Lus10038600 [exp] 56 / 2e-08 AT1G18310 50 / 4e-07 glycosyl hydrolase family 81 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [poplar] [flax] Gal_mutarotase PF03639 [poplar] [flax] Glyco_hydro_81 Glycosyl hydrolase family 81 N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.004G105300.1 pacid=42793847 polypeptide=Potri.004G105300.1.p locus=Potri.004G105300 ID=Potri.004G105300.1.v4.1 annot-version=v4.1 ATGTTGAAAAAACTGAAGAGACGAGTCCTCACCTCAATACGCAAGTCCTTCAGAAAACCTCGCAAGCGAATGCCTTATAAACCTCCTACTCCAAGTCCAT CTCCATCTCCACCTCCACAATCTCCTTCTCCTCCGCAAACTCCAACCATGCCTCAACATTCTCACCACAGGCCACCAAATTTTCCATTTCTCTTCCCTAA AGCTCAATCCACGGTCCTCCCTGATCCATCCCTTTTCCTCTCTCCTTCTCTCCTCTCCTCTCCATTGCCCACCAGTTCTTTCTTTCAAAACTTTACTCTT AAAAATGGTGATCAACCTGAATATATCCATCCATATCTCATAAAATCCTCTCTTTCTTCCCTTTCTGTTTCCTACCCATCTCAGTCTCACAACTCTTCTT TCATTTACCAGGTTTTTGTCGTTGATTTAACCATCTCCGCAACAAATAAAACTGACCCGAATCCAGGAAAAAGCCATGTTATCTCGTCTTATAGTGATCT TAGCGTCACTTTGGATATGCCCTCTTCGAATTTTCGGTTTTTTCTTGTTAGAGGAAGCCCTTTCTTGACTTGTTTGATCACTGGCAATACTGAAATTACC ATTTCAACGATCCACGCCATTCTCTCATTCTCTTCAAGTAATTCGCTCACCAAGTACACTGTCAAGCTCAACAACAATCAAACATGGCTCATATATTCAT CTTCTCCTATAAATTTGAGTCACGATCTTTCTTCTATCACTTCTGAAGGGTTTTCAGGGATTATAAGGATTGCTGTATTGCCGGATTCTGATCCTAAATA TGAAGCAATTCTTGATAGGTTCAGTTCTTGCTATCCCATATCAGGTGATGCATCTTTCACTAAACCATTTTGTTTAGAGTATAGATGGGAAAAGAAAGGT TGGGGTGATTTGCTTATGCTTGCACATCCTTTGCACTTAAGGCTTCTATCTAGTAAGGATTCTGATGTTACTGTTTTAGATGATTTCAAGTATAATAGTA TTGATGGTGAACTTGTTGGTGTTGTTGGGGATTCTTGGGTGTTGAAAACTGATCCTGTTTCAGTAACTTGGCACTCAATTAAGGGTATCAAAGAGGAATC TTATGGTGAAATTGTTGATGCACTTGTTAAGGATGTTGAGGGCTTAGATTCATCAGCTATAACAACAACATCATCTTATTTTTATGGTAAACTGATTGCA AGAGCAGCAAGGTTGGCTTTGATAGCTGAGGAGGTGAATTTTCTTGATGTGATTCCAACTATAAGAAAGTTCTTGAAGGAAACAATTGATCCATGGTTGG AAGGGACTTTTGGTGGGAATGGTTTCTTACATGATGATAAATGGGGTGGGATTGTCACCAAACAAGGGCTAACAGATTCGGGTGCTGATTTTGGGTTTGG GATTTATAATGACCATCACTATCATTTGGGGTACTTTCTGTATGGCATTGCTGTTCTTGCAAAAGTTGATCCAGCATGGGGTAGGAAGTACAGGTCACAA GCTTATTCACTTATGGCTGATTTTATGAACTTGGGAAGGCGATCAAATTCAAATTACACGCGCTTGAGGTGCTTTGATTTGTATAAATTGCATTCTTGGG CTGGAGGGCTAACTGAATTTGCTGATGGGCGGAACCAAGAGAGTACAAGTGAGGCAGTGAATGCATACTATTCAGCGGCTTTAATGGGTTTAGCATATGG AGACACTCATCTTGTTGCCACGGGATCAATGCTTGCTGCGTTGGAGATTCACGCAGCACAAACATGGTGGCATGTAAAAGAGGGCGATAAGCTGTACACG GAAGATTTCACTGGAGAGAACAGGTTGGTGGGTGTTTTGTGGGCTAGCAAGAGGGATAGCGGGCTCTGGTTTGCTCCTCCTGCGTGGAAAGAGTGTAGGC TCGGCATTCAGTTGCTGCCCTTGTTGCCTATTAGCGAAGTTTTATTCTCTGATGTTGGATTTGTAAGAAAGCTAGTGAATTGGACATTACCAGCTTTGGG GAGAGAAGGAGTTGGAGAAGGATGGAAAGGATTTGTTTATGCCTTGGAAGGCATTTATGACAAAGAAATTGCTTTGGAGAAGATTAAGAACTTGAATGAT CATGACGATGGCAACACACTTACTAATCTGTTATGGTGGATTCACAGCAGAGGTGATGAAGAGGAAGGGGGGTGGGAAGGAGGTGGGAAATTCAGCTGGT TTGGTTACTATTGTCACTGA
AA sequence Show only first row Show all	>Potri.004G105300.1 pacid=42793847 polypeptide=Potri.004G105300.1.p locus=Potri.004G105300 ID=Potri.004G105300.1.v4.1 annot-version=v4.1 MLKKLKRRVLTSIRKSFRKPRKRMPYKPPTPSPSPSPPPQSPSPPQTPTMPQHSHHRPPNFPFLFPKAQSTVLPDPSLFLSPSLLSSPLPTSSFFQNFTL KNGDQPEYIHPYLIKSSLSSLSVSYPSQSHNSSFIYQVFVVDLTISATNKTDPNPGKSHVISSYSDLSVTLDMPSSNFRFFLVRGSPFLTCLITGNTEIT ISTIHAILSFSSSNSLTKYTVKLNNNQTWLIYSSSPINLSHDLSSITSEGFSGIIRIAVLPDSDPKYEAILDRFSSCYPISGDASFTKPFCLEYRWEKKG WGDLLMLAHPLHLRLLSSKDSDVTVLDDFKYNSIDGELVGVVGDSWVLKTDPVSVTWHSIKGIKEESYGEIVDALVKDVEGLDSSAITTTSSYFYGKLIA RAARLALIAEEVNFLDVIPTIRKFLKETIDPWLEGTFGGNGFLHDDKWGGIVTKQGLTDSGADFGFGIYNDHHYHLGYFLYGIAVLAKVDPAWGRKYRSQ AYSLMADFMNLGRRSNSNYTRLRCFDLYKLHSWAGGLTEFADGRNQESTSEAVNAYYSAALMGLAYGDTHLVATGSMLAALEIHAAQTWWHVKEGDKLYT EDFTGENRLVGVLWASKRDSGLWFAPPAWKECRLGIQLLPLLPISEVLFSDVGFVRKLVNWTLPALGREGVGEGWKGFVYALEGIYDKEIALEKIKNLND HDDGNTLTNLLWWIHSRGDEEEGGWEGGGKFSWFGYYCH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15870			glycosyl hydrolase family 81 p...		Potri.004G105300 [exp]	0	1
AT5G19380		CLT1	CRT (chloroquine-resistance tr...		Potri.009G069400 [exp]	1.00	0.8618
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Potri.010G212700 [exp]	2.44	0.8471
AT5G17380			Thiamine pyrophosphate depende...		Potri.004G094600 [exp]	2.64	0.8317
AT2G05710		ACO3	aconitase 3 (.1)		Potri.002G229200 [exp]	4.24	0.8143
AT1G19010			unknown protein		Potri.001G350000 [exp]	8.36	0.8274
AT1G08630		THA1	threonine aldolase 1 (.1.2.3.4...		Potri.019G018500 [exp]	9.79	0.7965
AT5G56260			Ribonuclease E inhibitor RraA/...		Potri.011G169700 [exp]	10.39	0.8246
AT1G73730	EIL	AtEIL3, ATSLIM,...	ARABIDOPSIS THALIANA SULFUR LI...		Potri.001G015900 [exp]	13.34	0.8476	Pt-EIL3.2
AT1G01490			Heavy metal transport/detoxifi...		Potri.008G220100 [exp]	13.60	0.8382
AT5G38600			Proline-rich spliceosome-assoc...		Potri.017G111300 [exp]	14.69	0.8371

Compare expression of checked genes

Potri.004G105300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.