Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15900 530 / 0 TBL19 TRICHOME BIREFRINGENCE-LIKE 19 (.1) AT5G15890 496 / 2e-173 TBL21 TRICHOME BIREFRINGENCE-LIKE 21 (.1) AT3G28150 333 / 4e-111 AXY4L, TBL22 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) AT3G02440 330 / 3e-110 TBL20 TRICHOME BIREFRINGENCE-LIKE 20 (.1) AT4G01080 318 / 1e-104 TBL26 TRICHOME BIREFRINGENCE-LIKE 26 (.1) AT1G01430 317 / 6e-104 TBL25 TRICHOME BIREFRINGENCE-LIKE 25 (.1) AT4G11090 303 / 3e-99 TBL23 TRICHOME BIREFRINGENCE-LIKE 23 (.1) AT4G23790 302 / 9e-99 TBL24 TRICHOME BIREFRINGENCE-LIKE 24 (.1) AT1G70230 289 / 1e-93 AXY4, TBL27 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) AT5G51640 250 / 1e-77 TBL17, YLS7 YELLOW-LEAF-SPECIFIC GENE 7, TRICHOME BIREFRINGENCE-LIKE 17, Plant protein of unknown function (DUF828) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G105600 [exp] 490 / 8e-173 AT5G15900 411 / 5e-142 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.004G105500 [exp] 489 / 5e-172 AT5G15900 398 / 1e-136 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.017G110200 [exp] 487 / 3e-171 AT5G15900 419 / 2e-144 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.014G095800 [exp] 362 / 7e-122 AT1G01430 498 / 2e-175 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.002G168400 [exp] 359 / 7e-121 AT1G01430 495 / 4e-174 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.017G073700 [exp] 350 / 9e-118 AT3G28150 442 / 3e-154 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) Potri.003G137800 [exp] 343 / 3e-114 AT4G11090 500 / 4e-176 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Potri.001G093800 [exp] 340 / 4e-113 AT4G11090 516 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Potri.011G144100 [exp] 328 / 2e-109 AT3G28150 415 / 9e-144 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034087 [exp] 615 / 0 AT5G15890 490 / 1e-172 TRICHOME BIREFRINGENCE-LIKE 21 (.1) Lus10003061 [exp] 611 / 0 AT5G15900 488 / 5e-172 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10024167 [exp] 432 / 5e-150 AT5G15900 381 / 3e-130 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10005952 [exp] 346 / 1e-116 AT1G01430 464 / 5e-163 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10029454 [exp] 347 / 3e-116 AT1G01430 488 / 2e-171 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10033950 [exp] 322 / 2e-105 AT4G11090 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Lus10032367 [exp] 320 / 7e-105 AT4G11090 521 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Lus10010704 [exp] 315 / 4e-103 AT1G70230 459 / 2e-160 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) Lus10029188 [exp] 310 / 1e-101 AT1G70230 461 / 5e-161 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) Lus10039438 [exp] 309 / 2e-101 AT3G28150 431 / 8e-150 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.004G105700.1 pacid=42795494 polypeptide=Potri.004G105700.1.p locus=Potri.004G105700 ID=Potri.004G105700.1.v4.1 annot-version=v4.1 ATGAAGGTTTATGCCATGAATCAGCTTCCCTTTGGCAGCAAGCACCATGCTCTACGAAAAAACACACCAACAATAGCCCTAACAGTAACCTTTACCCTGG TTTTTTTCACAGTTGTTCCTCTATGTTACCCTTTGCTAGGGTACCCTTTATATTTGTTGAAAAGCTTTTCCAAGTCACAAATCTCAATATCATCTTATGT TGCTGTGAAGTATGGCTCAATATTTGAGCATGAAAGTGAGCAGAAATGTGACATATTCACAGGAGAATGGATACCAAATCCTCATGCACCGTATTACACA AACACAACATGCTGGGCAATACATGAGCATCAAAATTGCATGAAATATGGAAGACCCGATACTGGGTTCATGAAATGGAGATGGCAACCAGATGGATGTG AGCTACCTGTTTTTAATCCTGCTCAGTTCCTTGAAATTGTTAAAGGCAAGTCTATGGCTTTTGTTGGAGACTCTGTGGGTAGAAACCAAATGCAGTCCTT GATATGCCTTCTATCCAGGGTGGAATATCCCATTGATGTTTCATATACACCAGATGAACACTTCAAACGTTGGAGGTATCCATCATACAATTTCACCCTC GCAACGTTTTGGACACCCCATTTAGTCAAGGCTGAAGAAACAGATGCCTATGGACCGACTCACACCGGCCTCTTCAACCTCTACCTTGATGAATTTGATG AAGGATGGACAACCCAAATCGAGGAGTTTGATTATGTGATCATCAATGCAGGGCATTGGTTCTATCGTCCATGCGTTTACTATGAAAATCGCCAAGTAGT TGGTTGTCGATTTTGCCTCCTAGAAAATGTGACAGACTTGCCTATGTATTTTGGGTACAGAAAAGCGTTTAGGACAGCTTTTAGAGCCCTTAATAGCCTA GAAAATTATAAGGGTATAACATTTCTTAGGACATTTGCACCATCACACTTCGAGAATGGGGAATGGAATAAAGGTGGGAATTGTGTGAGAAGAAGGCCTT TTAGAAGCAATGAGACTAGTTTGGAGGGTATAAATTTTGAGCTTTACATGACACAATTGGAGGAGTTTAAGCTTGCTGAGAAGGAAGGGAAAAAGAGGGG TTTGAGATTTAGGTTATTGGACACCACACAAGCTATGTTGTTGAGGCCAGATGGTCACCCTAGCAGATATGGGCATTGGCCTCATGAAAATGTCACCTTG TATAATGATTGTGTGCATTGGTGCTTGCCTGGCCCAATTGATACATGGAATGATTTCTTGTTGGAAATGTTGAAGATGGAGGGTGTGAGATCATACGAGG AGAAGCTTGATTTAAGTGATAGAAAAATGAAGTTGAGATAA
AA sequence Show only first row Show all	>Potri.004G105700.1 pacid=42795494 polypeptide=Potri.004G105700.1.p locus=Potri.004G105700 ID=Potri.004G105700.1.v4.1 annot-version=v4.1 MKVYAMNQLPFGSKHHALRKNTPTIALTVTFTLVFFTVVPLCYPLLGYPLYLLKSFSKSQISISSYVAVKYGSIFEHESEQKCDIFTGEWIPNPHAPYYT NTTCWAIHEHQNCMKYGRPDTGFMKWRWQPDGCELPVFNPAQFLEIVKGKSMAFVGDSVGRNQMQSLICLLSRVEYPIDVSYTPDEHFKRWRYPSYNFTL ATFWTPHLVKAEETDAYGPTHTGLFNLYLDEFDEGWTTQIEEFDYVIINAGHWFYRPCVYYENRQVVGCRFCLLENVTDLPMYFGYRKAFRTAFRALNSL ENYKGITFLRTFAPSHFENGEWNKGGNCVRRRPFRSNETSLEGINFELYMTQLEEFKLAEKEGKKRGLRFRLLDTTQAMLLRPDGHPSRYGHWPHENVTL YNDCVHWCLPGPIDTWNDFLLEMLKMEGVRSYEEKLDLSDRKMKLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Potri.004G105700 [exp]	0	1
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Potri.003G183900 [exp]	1.00	0.9120
AT4G19670			RING/U-box superfamily protein...		Potri.012G119000 [exp]	3.16	0.8413
AT2G23360			Plant protein of unknown funct...		Potri.007G046100 [exp]	3.46	0.8958
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.011G058400 [exp]	3.87	0.8856
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Potri.004G203400 [exp]	4.24	0.8538
AT2G03360			Glycosyltransferase family 61 ...		Potri.008G092700 [exp]	7.21	0.8677
AT1G22410			Class-II DAHP synthetase famil...		Potri.002G099200 [exp]	8.06	0.8565
AT2G20030			RING/U-box superfamily protein...		Potri.002G153400 [exp]	10.77	0.7909
AT2G40470	AS2	ASL11, LBD15	ASYMMETRIC LEAVES2-LIKE 11, LO...		Potri.013G081200 [exp]	12.12	0.8472
AT4G35550	HD	HB-4, WOX13, AT...	WUSCHEL related homeobox 13 (....		Potri.002G008800 [exp]	12.32	0.8453	HB1.3

Compare expression of checked genes

Potri.004G105700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.