Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67180 237 / 3e-72 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1) AT4G02110 77 / 1e-14 transcription coactivators (.1) AT3G05670 63 / 4e-10 RING/U-box protein (.1) AT4G09100 46 / 5e-06 RING/U-box superfamily protein (.1) AT3G55530 45 / 8e-05 SDIR1 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) AT3G05250 44 / 0.0001 RING/U-box superfamily protein (.1) AT1G77320 44 / 0.0004 MEI1 meiosis defective 1, transcription coactivators (.1.2) AT2G04240 41 / 0.0005 XERICO RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G197400 [exp] 70 / 2e-12 AT4G02110 374 / 6e-110 transcription coactivators (.1) Potri.014G122400 [exp] 66 / 5e-11 AT4G02110 382 / 4e-112 transcription coactivators (.1) Potri.013G011400 [exp] 64 / 1e-10 AT3G05670 417 / 7e-133 RING/U-box protein (.1) Potri.005G021000 [exp] 62 / 6e-10 AT3G05670 436 / 2e-140 RING/U-box protein (.1) Potri.005G182500 [exp] 51 / 2e-06 AT1G77320 1011 / 0.0 meiosis defective 1, transcription coactivators (.1.2) Potri.010G201500 [exp] 46 / 2e-05 AT3G55530 310 / 2e-106 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Potri.005G035600 [exp] 42 / 0.0005 AT3G05250 308 / 7e-106 RING/U-box superfamily protein (.1) Potri.003G139900 [exp] 42 / 0.0008 AT5G53110 253 / 3e-81 RING/U-box superfamily protein (.1) Potri.010G133200 [exp] 40 / 0.0009 AT3G61460 69 / 3e-15 brassinosteroid-responsive RING-H2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034088 [exp] 335 / 4e-108 AT1G67180 250 / 2e-76 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1) Lus10010017 [exp] 73 / 3e-13 AT4G02110 365 / 3e-108 transcription coactivators (.1) Lus10015213 [exp] 64 / 2e-10 AT3G05670 368 / 2e-112 RING/U-box protein (.1) Lus10031468 [exp] 60 / 3e-09 AT3G05670 343 / 2e-107 RING/U-box protein (.1) Lus10001455 [exp] 57 / 3e-08 AT4G02110 372 / 1e-108 transcription coactivators (.1) Lus10000854 [exp] 48 / 2e-05 AT1G77320 796 / 0.0 meiosis defective 1, transcription coactivators (.1.2) Lus10028677 [exp] 47 / 4e-05 AT1G21640 1112 / 0.0 NAD kinase 2 (.1.2) Lus10018292 [exp] 44 / 5e-05 AT3G51325 74 / 3e-18 RING/U-box superfamily protein (.1) Lus10011702 [exp] 44 / 0.0002 AT4G28890 231 / 1e-71 RING/U-box superfamily protein (.1) Lus10016427 [exp] 42 / 0.0004 AT1G72310 59 / 4e-11 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0459 [poplar] [flax] BRCT-like PF12738 [poplar] [flax] PTCB-BRCT twin BRCT domain CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.004G106000.1 pacid=42794695 polypeptide=Potri.004G106000.1.p locus=Potri.004G106000 ID=Potri.004G106000.1.v4.1 annot-version=v4.1 ATGGAATCTGTGGTGGCAACTGTTAGCGGTTACCATGGCTCCGAGAGGTTTAACCTAATTAAGCTCATCTCTCAATCTGGTGCGAGTTATGTTGGTGCAA TGTCAAATTCCACTACACATTTGGTATGTTGGAAATTTGAAGGGAGGAAATATGAGCTAGCCAGCAAGTTTGATACTCTTGTTGTTAATCATCGATGGGT CGAAGAATGTGTTAAGCAAGGAAAGCGTGTTCCGGAGTATCCTTACATGTTGGAAAGTGGACAAGAAGTGGGGCCTTTAGTCTTGGACGTCCCAAACGTT GATAAACTTGGGTCCTTGAATAAGAAGAGAAAACCGTTGTCTGACAAATCCAACAATTGCGAGGACTCTGAAAGACGAATAGTTGATGTGGATTGTGAAG ATTCTGGCCTTGCAGCATGGAGTGATTCCTTTTTGTTGAATGATGTAAAGAGTTTGGTTCCTGATGTTGGGAAAAACAACAGTAATTTATATAAATCAAA GCTCAAAAAGGCAAAAAAACCTTCGAAGCAGGAAAACTGTTCAGGTAGCAGATACTGTTTTCAGGACCCTACTTTTTCTGGGCTAGTTGGATTGGAGCAT GGAGGTTCAAGTTATAATTCTTCAAGACATGAAGAGTCAGATATTGTGCCTAATATGCATTTCGTGAGAGGAAGGAGGAATACTTTTAGCAATACTGGAA GCACTTTGGCCGAACCTTCTCGTAAAGGTCGAAGGCTCATGAAGAAAAATATTGCCAGAGACAATTTGGAAACTCTGCTTTCTGATTCTGACCAAGAGTG GCATCCAGTTAGACTTAATAAGAACAATAACAGTAAATCAACAGCTAAACGTACAGGTTGCAAAAGGAAACTTGATATATTTGAAGCTGAAGTAACATCT GATGTTGCTGTGATTAATAATAGGGGTTCAGCAGTTGAGTCTTTGGATGAAATTGAAGAGGGAACACATTGGAATCACCTACCTGTTTCTGAGTATTCAA ATTCATTTCCTGAGGGTGCACTGACTGCATCAGAAATAGCAGATAGCTCTGGCTCTGCTGCTGAGAATTTAAATGCAAAGGTTAAAGATATGGATCAGTT TGAATCTGTAGCCAGATTACCTGCTCCAGCAGAGTTATCATGTGTTATATGTTGGACAGAATTTAGTTCAACCAGAGGTGTGTTGCCATGTGGTCATCGA TTTTGTTATTCATGCATTCAAGAATGGGCTGATCACATGGCTTCCAGGAGAAGAATTTCAACCTGTCCTCTGTGCAAGGCTGGTTTTTCAATCATAACAA AGGTGGAGGATGCGGCCACCTCTGATCAAAAAATTTATTCTCAAACTATACCGCATGCATCATCAACAGTAGATGTTTTCTTTAGTATGCTTCAAGAACA AAATAAATTTGGTGCCGAGCCCTCATTTGGATCAGTGTGTTGTGAATGCCGTAGTCGGGAACCTGAGGATCTACTCATTAGATGTCATCTGTGCGAGACT CGATGTATCCATTCCTACTGCCTGGACCCTCCTTTGTCACCATGGATATGCACTCACTGCAAGGATCTTCAAATGCTTTATCATCACAACCGTTAA
AA sequence Show only first row Show all	>Potri.004G106000.1 pacid=42794695 polypeptide=Potri.004G106000.1.p locus=Potri.004G106000 ID=Potri.004G106000.1.v4.1 annot-version=v4.1 MESVVATVSGYHGSERFNLIKLISQSGASYVGAMSNSTTHLVCWKFEGRKYELASKFDTLVVNHRWVEECVKQGKRVPEYPYMLESGQEVGPLVLDVPNV DKLGSLNKKRKPLSDKSNNCEDSERRIVDVDCEDSGLAAWSDSFLLNDVKSLVPDVGKNNSNLYKSKLKKAKKPSKQENCSGSRYCFQDPTFSGLVGLEH GGSSYNSSRHEESDIVPNMHFVRGRRNTFSNTGSTLAEPSRKGRRLMKKNIARDNLETLLSDSDQEWHPVRLNKNNNSKSTAKRTGCKRKLDIFEAEVTS DVAVINNRGSAVESLDEIEEGTHWNHLPVSEYSNSFPEGALTASEIADSSGSAAENLNAKVKDMDQFESVARLPAPAELSCVICWTEFSSTRGVLPCGHR FCYSCIQEWADHMASRRRISTCPLCKAGFSIITKVEDAATSDQKIYSQTIPHASSTVDVFFSMLQEQNKFGAEPSFGSVCCECRSREPEDLLIRCHLCET RCIHSYCLDPPLSPWICTHCKDLQMLYHHNR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67180			zinc finger (C3HC4-type RING f...		Potri.004G106000 [exp]	0	1
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Potri.009G055900 [exp]	3.87	0.9113
AT3G12110		ACT11	actin-11 (.1)		Potri.006G192700 [exp]	11.57	0.9033	Pt-ACT2.4
AT5G56590			O-Glycosyl hydrolases family 1...		Potri.005G253900 [exp]	11.83	0.8843
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Potri.001G068400 [exp]	14.14	0.8907	CYP51.2
AT5G06940			Leucine-rich repeat receptor-l...		Potri.006G056600 [exp]	20.04	0.8851
AT1G23790			Plant protein of unknown funct...		Potri.008G192300 [exp]	20.56	0.8973
AT3G09410			Pectinacetylesterase family pr...		Potri.006G084900 [exp]	22.24	0.8686
AT1G04040			HAD superfamily, subfamily III...		Potri.002G257700 [exp]	26.45	0.8897
AT4G24610			unknown protein		Potri.002G104100 [exp]	31.17	0.8209
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Potri.007G047900 [exp]	31.81	0.8732

Compare expression of checked genes

Potri.004G106000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.