Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61600 398 / 5e-137 Protein of unknown function (DUF1262) (.1) AT1G13540 277 / 2e-90 Protein of unknown function (DUF1262) (.1) AT1G13480 271 / 9e-88 Protein of unknown function (DUF1262) (.1) AT1G13510 262 / 2e-84 Protein of unknown function (DUF1262) (.1) AT1G13520 261 / 7e-84 Protein of unknown function (DUF1262) (.1) AT1G13530 258 / 6e-83 Protein of unknown function (DUF1262) (.1) AT1G13500 252 / 1e-80 Protein of unknown function (DUF1262) (.1) AT1G13470 246 / 2e-78 Protein of unknown function (DUF1262) (.1) AT1G13490 235 / 4e-74 Protein of unknown function (DUF1262) (.1) AT1G13550 220 / 4e-68 Protein of unknown function (DUF1262) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G109400 [exp] 380 / 2e-130 AT1G13480 321 / 2e-107 Protein of unknown function (DUF1262) (.1) Potri.T093108 [exp] 379 / 4e-130 AT1G13480 323 / 3e-108 Protein of unknown function (DUF1262) (.1) Potri.008G109500 [exp] 377 / 4e-129 AT1G13480 339 / 3e-114 Protein of unknown function (DUF1262) (.1) Potri.T077590 [exp] 375 / 2e-128 AT1G13480 334 / 1e-112 Protein of unknown function (DUF1262) (.1) Potri.018G008300 [exp] 357 / 3e-121 AT1G13480 330 / 1e-110 Protein of unknown function (DUF1262) (.1) Potri.010G133500 [exp] 345 / 1e-116 AT1G13480 310 / 3e-103 Protein of unknown function (DUF1262) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030977 [exp] 421 / 2e-146 AT1G61600 342 / 9e-115 Protein of unknown function (DUF1262) (.1) Lus10035080 [exp] 278 / 4e-90 AT1G13520 313 / 6e-104 Protein of unknown function (DUF1262) (.1) Lus10031913 [exp] 275 / 7e-89 AT1G13480 305 / 8e-101 Protein of unknown function (DUF1262) (.1) Lus10031916 [exp] 190 / 2e-58 AT1G61600 178 / 9e-54 Protein of unknown function (DUF1262) (.1) Lus10031914 [exp] 107 / 2e-27 AT1G13550 114 / 2e-30 Protein of unknown function (DUF1262) (.1) Lus10035372 [exp] 105 / 4e-27 AT1G61600 84 / 2e-19 Protein of unknown function (DUF1262) (.1) Lus10031915 [exp] 89 / 5e-21 AT1G13510 108 / 8e-29 Protein of unknown function (DUF1262) (.1) Lus10035379 [exp] 74 / 1e-15 AT1G61600 83 / 3e-19 Protein of unknown function (DUF1262) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06880 [poplar] [flax] DUF1262 Protein of unknown function (DUF1262)
Representative CDS sequence Show only first row Show all	>Potri.004G106100.1 pacid=42794065 polypeptide=Potri.004G106100.1.p locus=Potri.004G106100 ID=Potri.004G106100.1.v4.1 annot-version=v4.1 ATGTATGTGACGAGGCCACTTTCCTTGTACAGGAATTTCCCGAGTGCTCTTTCAAGAGAGCCACCTGAAGGTCCACACACCGGTTACCTGGTAATTACTG ATGAAGAAGCAGAAGCACAGGAGACGTATTGTTGGGGTATTCGTAAGAGCAGGAGAGTTAAAAAGCTCCCATTCCCTCAAGACAAGATACTATCTGTAGT TCACTCGTCTGATCATGAAGAAACTATAGTTAAGAAGGCTTGGTTTATCCCAGTTCTTGATCAGCCTCTGTCCTCTAATTGCTATTATGTTATCAAGGCT AAGGGCTCACACAAAGGGCAAGCTTGCACATGTTCAAGGGAGATGGACATGGGTTTATGGTGCTTCAAGAGTGTCATAAATGACATAAAACCGAAGCCAT TTGATTACAGAAACATATACCAGCAATTCAAGATTCATAGACATCATGGAAAGAGTTTCTTCTCTAAGTCTCTTGCTCCAGATGGTTTTCCTCCAAGATT TCTAAGAAAAAAGGGTTGGGAAGTTAGAAGCTCAAGGTCTTACAAATTTCAACTAAGTGAAGCTTTAGGTCTTGATGTCCCTCTCCGATCACAACTCCCA AGCTTCGACTTTCCATTGTCTACCAAGAGTTCCTCTCGTGTGACTGTCGGAAGATGGTACTGCCCTTTTGTGCTTGTTAGAGAAGAACCTAGAATAAGGG AGCAAATGAAGAGAACAATGTTATACAGCATGACTCTTGAGCAATATTGGAAGGAGATATATTCATGTGAGAATGCCAACAATGAAGCAGAAAGTACTAT AATGGTGAGTGTAAATGTGCAAAGAGAAATGGATTTAGTCTTTGGCATGGAAGCAACAAGGGATGGTGGAGTAAGTCATGGTGGGGTTATATGGTATAGA GTTGTAAGCAGAAATAGCAGCGGGAGAGGGTTTAAGGTGGGTGTAAGTGCTGCAACTGTTGAAAAAATGAAATGGGTGCAAGAGGCAGGAGGATGGATTG ATGGGGGAGATGTAAATGAGACGGTGGAGAGAGCGGTGGAGATCAGAAGTGAAAATGGGTGGAGAAAGTTTGGCTGCTATGCGTTGGTGGAGAGTTTTGT GCTGAGAAGGATGGATGGAAGCTTGGTGCTGAGATGTGACTTCAGACACACGCATAAAATCAAGAGCAAATGGGAATAA
AA sequence Show only first row Show all	>Potri.004G106100.1 pacid=42794065 polypeptide=Potri.004G106100.1.p locus=Potri.004G106100 ID=Potri.004G106100.1.v4.1 annot-version=v4.1 MYVTRPLSLYRNFPSALSREPPEGPHTGYLVITDEEAEAQETYCWGIRKSRRVKKLPFPQDKILSVVHSSDHEETIVKKAWFIPVLDQPLSSNCYYVIKA KGSHKGQACTCSREMDMGLWCFKSVINDIKPKPFDYRNIYQQFKIHRHHGKSFFSKSLAPDGFPPRFLRKKGWEVRSSRSYKFQLSEALGLDVPLRSQLP SFDFPLSTKSSSRVTVGRWYCPFVLVREEPRIREQMKRTMLYSMTLEQYWKEIYSCENANNEAESTIMVSVNVQREMDLVFGMEATRDGGVSHGGVIWYR VVSRNSSGRGFKVGVSAATVEKMKWVQEAGGWIDGGDVNETVERAVEIRSENGWRKFGCYALVESFVLRRMDGSLVLRCDFRHTHKIKSKWE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61600			Protein of unknown function (D...		Potri.004G106100 [exp]	0	1
AT1G55790			Domain of unknown function (DU...		Potri.011G165600 [exp]	1.00	0.9346
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Potri.017G017100 [exp]	2.00	0.9303
AT3G48770			DNA binding;ATP binding (.1)		Potri.015G103100 [exp]	4.47	0.8989
AT3G48770			DNA binding;ATP binding (.1)		Potri.015G102700 [exp]	5.74	0.9022
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Potri.003G142400 [exp]	6.00	0.8725
AT4G29920			Double Clp-N motif-containing ...		Potri.006G073800 [exp]	7.41	0.8748
AT3G25560		NIK2	NSP-interacting kinase 2 (.1.2...		Potri.008G110300 [exp]	7.41	0.8930
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.015G003500 [exp]	10.24	0.8280
AT5G44170			S-adenosyl-L-methionine-depend...		Potri.001G148200 [exp]	11.61	0.8803
AT3G60720		PDLP8	plasmodesmata-located protein ...		Potri.014G067000 [exp]	13.74	0.8855

Compare expression of checked genes

Potri.004G106100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.