Plant FIBer expression Database

Potri.004G106200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G30841 823 / 0 Cofactor-independent phosphoglycerate mutase (.1)
AT4G09520 811 / 0 Cofactor-independent phosphoglycerate mutase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G109500
[exp]
952 / 0 AT3G30841 803 / 0.0 Cofactor-independent phosphoglycerate mutase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034089
[exp]
867 / 0 AT3G30841 814 / 0.0 Cofactor-independent phosphoglycerate mutase (.1)
Lus10003060
[exp]
865 / 0 AT3G30841 814 / 0.0 Cofactor-independent phosphoglycerate mutase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0088 Alk_phosphatase PF01676 Metalloenzyme Metalloenzyme superfamily
CL0088 PF10143 PhosphMutase 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Representative CDS sequence
>Potri.004G106200.1 pacid=42794781 polypeptide=Potri.004G106200.1.p locus=Potri.004G106200 ID=Potri.004G106200.1.v4.1 annot-version=v4.1
ATGGTTACTCCTCAGCAGCCAAAGAGGAGAGTGGCATTTATCCTGATCGATGGACTGGGTGATGTGTCATTGCCGAGGCTTGGCTACAAGACTCCTTTGC
AAGCAGCAAACGTGCCTAACTTAGATGCTATTGCATCTGGCGGAGTTAATGGCCTTATGGACCCTGTTGAAGTAGGCTTGGGTTGTGGAAGTGACACTGC
TCACCTTTCCTTGTTAGGTTATGACCCAAGGGTTTACTATCGGGGTCGAGGAGCTTTTGAGTCCATGGGTGCTGGATTGGCAATGTCTTCTGGCGATATT
GCATTCAAATCAAATTTTGCAACGTTAGATGAGAAAACTGGAATAGTCACCAGTAGAAGGGCTGATAGGCATTTTGAAGAAGAAGGGCCTATTCTCTGTG
CAGCTCTGGATGGAATGAGGTTGCCGTCTTTCCCAGAATATGAAGTCAGAGTCAGGTATGCAACAGAACATAGATGTGGAGTAGTGGTGAAAGGTCCAAA
ACTGAGTGGGAATATATCAGCAACAGATCCACTTAAGGACAACCGCTTACTTCTTCAAGCTGAAGCCTTAGATAGCACTGACGAGGCAAGACATACAGCT
GCAGTTGTTAATGAGCTATCCAGGGAGATATCTCGTATTCTGGTTTCTCACCCACTAAATGCAAAACGAGCAGCAGAAGGTAAGAATATTGCCAATGTGG
TCCTTTTACGAGGATGTGGCATTCGAATTGAGGTACCTTCTTTTCAGGATAAACATGGTTTGTGGGCATGCATGGTAGCTCCCACTAAAATTATTGCTGG
TTTGGGATTATCACTAGATATTGATATTCTAGAAGCTCCTGGAGCAACCGGAGATTATCGAACGCTTTTGACTTCCAAAGCAACTGTCATAGCTAAGGCA
CTCTCAGCTCCATTGACGCCTTCTCCCAATGTATTTGTACCAGGGGAGGACGAGCACAAACCAGGACGACCAGATGGCTATGACTTTGGGTTTCTCCACA
TTAAGGCAATAGATGATGCAGGCCATGACAAGGCAAGCATTTTGAAAGTAAAAGCATTGGAAGCTGTAGATCGAACTATTGGCCAGCTGGCCAAGCTCCT
CTTGCAAGCAGAATCAACCGGAAAGTTTCAGTATTTCATTTGTGTCACTGGAGATCACTCTACGCCGGTTGAATATGGAGACCATAGTTTTGAACCAGTT
CCGTTTTCGATGTGCCGGTTGAGAGATTTTGTGGGTGCCGTGGGTGGAGAGTCCATCATCATGGAAACTTCCCTTGATCCATTTCCTATTCCTACTGTTA
AGGCTGGTGAAGACCTTGTGGAAGCTGAGAAAGTGGGAAAGGAGGGAAGCAGCAAACAGCTTAAAGCTTTCAGCGGTGATTCAGTTTGTGAACTTAGTGA
GATAGCGGCAGCAAGAGGATGCCTTGGACGGTTTCCAGGGGGACAAATGATGGGTATTATCAAGGCATTTCTCGAACTAAATGCATAA
AA sequence
>Potri.004G106200.1 pacid=42794781 polypeptide=Potri.004G106200.1.p locus=Potri.004G106200 ID=Potri.004G106200.1.v4.1 annot-version=v4.1
MVTPQQPKRRVAFILIDGLGDVSLPRLGYKTPLQAANVPNLDAIASGGVNGLMDPVEVGLGCGSDTAHLSLLGYDPRVYYRGRGAFESMGAGLAMSSGDI
AFKSNFATLDEKTGIVTSRRADRHFEEEGPILCAALDGMRLPSFPEYEVRVRYATEHRCGVVVKGPKLSGNISATDPLKDNRLLLQAEALDSTDEARHTA
AVVNELSREISRILVSHPLNAKRAAEGKNIANVVLLRGCGIRIEVPSFQDKHGLWACMVAPTKIIAGLGLSLDIDILEAPGATGDYRTLLTSKATVIAKA
LSAPLTPSPNVFVPGEDEHKPGRPDGYDFGFLHIKAIDDAGHDKASILKVKALEAVDRTIGQLAKLLLQAESTGKFQYFICVTGDHSTPVEYGDHSFEPV
PFSMCRLRDFVGAVGGESIIMETSLDPFPIPTVKAGEDLVEAEKVGKEGSSKQLKAFSGDSVCELSEIAAARGCLGRFPGGQMMGIIKAFLELNA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G30841 Cofactor-independent phosphogl... Potri.004G106200
[exp]
0 1
AT4G04320 malonyl-CoA decarboxylase fami... Potri.004G005500
[exp]
1.00 0.7064
AT1G11880 transferases, transferring hex... Potri.003G216900
[exp]
1.41 0.6800
AT3G17590 CHE1, BSH BUSHY GROWTH, transcription re... Potri.010G004100
[exp]
4.24 0.6538 Pt-BSH.1
AT2G26800 Aldolase superfamily protein (... Potri.006G036800
[exp]
5.65 0.6338
Potri.001G014050
[exp]
19.74 0.6250
AT2G19450 RDS1, DGAT1, AT... TRIACYLGLYCEROL BIOSYNTHESIS D... Potri.006G147600
[exp]
19.89 0.6672
AT5G26751 ATSK11 ,SK 11 ARABIDOPSIS THALIANA SHAGGY-RE... Potri.013G004700
[exp]
21.35 0.6027 MSK.4
AT4G26190 Haloacid dehalogenase-like hyd... Potri.015G059000
[exp]
23.97 0.6025
AT1G30540 Actin-like ATPase superfamily ... Potri.001G466900
[exp]
28.28 0.6137
AT3G55490 GINS complex protein (.1) Potri.008G068100
[exp]
29.24 0.6614 TTN10.1

Potri.004G106200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.