Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10730 359 / 1e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G15910 302 / 3e-103 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G32220 169 / 8e-51 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G33630 44 / 0.0001 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G28840 41 / 0.0008 GME "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G268000 [exp] 356 / 2e-124 AT5G10730 431 / 1e-153 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.018G013400 [exp] 352 / 1e-122 AT5G10730 422 / 2e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G136900 [exp] 169 / 9e-51 AT1G32220 328 / 8e-113 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.011G079600 [exp] 44 / 6e-05 AT2G34460 370 / 6e-130 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G005100 [exp] 44 / 8e-05 AT2G33630 738 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020108 [exp] 326 / 4e-112 AT5G10730 427 / 5e-152 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035719 [exp] 306 / 2e-104 AT5G10730 271 / 9e-91 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10037306 [exp] 183 / 3e-57 AT5G10730 151 / 7e-45 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010419 [exp] 172 / 3e-51 AT1G32220 397 / 5e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012126 [exp] 112 / 2e-30 AT1G32220 241 / 3e-81 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10000057 [exp] 89 / 1e-21 AT1G32220 201 / 1e-65 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012127 [exp] 54 / 2e-08 AT1G32220 106 / 3e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10001777 [exp] 45 / 3e-05 AT5G28840 724 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Lus10020247 [exp] 44 / 0.0001 AT5G28840 719 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Lus10015915 [exp] 41 / 0.0008 AT5G28840 726 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.004G106300.1 pacid=42796244 polypeptide=Potri.004G106300.1.p locus=Potri.004G106300 ID=Potri.004G106300.1.v4.1 annot-version=v4.1 ATGATGAAGACCATCATTTCACGCTTGCTACATTCACAGTCTCCACCATTTCTTAAACCCCATTGTTACCGAGACAGTTCACTGTTTGCAGCTAGAATTG GAAGATTCTTGTCTACAGGCTCTGAGAAGGTTGATGGATCATCAAAACTTGAAGAAGCAGAGAGAGAGGAATTTACACCTCCAAGAGAAAAGCTACTTGT TTTAGGTGGAAATGGATTTGTTGGGTCACATATATGCATAGAAGCTCTAGCCCATGGTTTGAATGTATCCAGCTTGAGCAGGTCGGGAAAATCTTCTCTA CATGATCCTTGGGCTAACGACATAGTCTGGCATCAAGGAGATCTGCTTTCACCTGATTCACTAGGGAATGCACTGAATGGAGTGACCTCTGTGATCTCAT GTGTTGGAGGTTTTGGCTCAAACTCTTACATGTATGACATCAATGGAACTGCAAATATAAATGCTATTAGAGCTGCCTCAGAACAAGGTGTCAAAAGATT TGTATATATCTCTGCTGCCGACTTTGGTCTGGTGAATTATTTACTAAAAGGATATTTTGCTGGAAAGAGATCAACAGAAACCGAACTACTGGATAAATTC CAGCATGGAGGTGCAATACTCAGGCCAGGTTTCATACATGGTACTCGCAGGGTTGGGAGTGTTCATTTACCTTTAAGTATCATCGGGGCTCCACTGGAGA TGGTCCTCCGACATGCTAAACCACTGACCCGACTCCCACTCATTGGTCCTCTTTTTATACCGCCTGTAAACGTCACTTCAGTGGCAAAGGTTGCTGTAAG AGCTGCAGTTGATCCAGCATTCCCTTCTGGCGTTGTTGATGTATATGGTATACGACAATATAGCCAGCAAAACCCCGCTTAG
AA sequence Show only first row Show all	>Potri.004G106300.1 pacid=42796244 polypeptide=Potri.004G106300.1.p locus=Potri.004G106300 ID=Potri.004G106300.1.v4.1 annot-version=v4.1 MMKTIISRLLHSQSPPFLKPHCYRDSSLFAARIGRFLSTGSEKVDGSSKLEEAEREEFTPPREKLLVLGGNGFVGSHICIEALAHGLNVSSLSRSGKSSL HDPWANDIVWHQGDLLSPDSLGNALNGVTSVISCVGGFGSNSYMYDINGTANINAIRAASEQGVKRFVYISAADFGLVNYLLKGYFAGKRSTETELLDKF QHGGAILRPGFIHGTRRVGSVHLPLSIIGAPLEMVLRHAKPLTRLPLIGPLFIPPVNVTSVAKVAVRAAVDPAFPSGVVDVYGIRQYSQQNPA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10730			NAD(P)-binding Rossmann-fold s...		Potri.004G106300 [exp]	0	1
AT1G31812		ACBP6, ACBP	acyl-CoA-binding protein 6 (.1...		Potri.001G130200 [exp]	7.68	0.7003
AT5G63060			Sec14p-like phosphatidylinosit...		Potri.015G080100 [exp]	8.36	0.6679
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Potri.004G018200 [exp]	9.38	0.6476
AT1G03250			unknown protein		Potri.019G046400 [exp]	9.59	0.6562
AT3G23600			alpha/beta-Hydrolases superfam...		Potri.008G201400 [exp]	14.00	0.6489
AT1G22750			unknown protein		Potri.005G198600 [exp]	26.00	0.6271
AT5G04430		BTR1S, BTR1L, B...	BINDING TO TOMV RNA 1S \(SHORT...		Potri.010G230500 [exp]	37.56	0.6394
AT1G51410			NAD(P)-binding Rossmann-fold s...		Potri.009G052000 [exp]	38.66	0.6432	CCRL4
AT4G32600			RING/U-box superfamily protein...		Potri.018G034400 [exp]	39.98	0.6080
AT1G08110			lactoylglutathione lyase famil...		Potri.009G007200 [exp]	40.39	0.6190

Compare expression of checked genes

Potri.004G106300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.