Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38710 533 / 0 Methylenetetrahydrofolate reductase family protein (.1) AT3G30775 509 / 4e-178 PDH1, PRODH, PRO1, AT-POX, ATPOX, ATPDH, ERD5 proline dehydrogenase 1, EARLY RESPONSIVE TO DEHYDRATION 5, ARABIDOPSIS THALIANA PROLINE OXIDASE, Methylenetetrahydrofolate reductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G109300 [exp] 822 / 0 AT5G38710 501 / 3e-175 Methylenetetrahydrofolate reductase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005114 [exp] 573 / 0 AT3G30775 494 / 4e-172 proline dehydrogenase 1, EARLY RESPONSIVE TO DEHYDRATION 5, ARABIDOPSIS THALIANA PROLINE OXIDASE, Methylenetetrahydrofolate reductase family protein (.1) Lus10003051 [exp] 557 / 0 AT5G38710 497 / 2e-173 Methylenetetrahydrofolate reductase family protein (.1) Lus10034094 [exp] 553 / 0 AT5G38710 494 / 4e-172 Methylenetetrahydrofolate reductase family protein (.1) Lus10034095 [exp] 520 / 0 AT5G38710 460 / 2e-160 Methylenetetrahydrofolate reductase family protein (.1) Lus10003053 [exp] 356 / 2e-119 AT5G38710 311 / 1e-102 Methylenetetrahydrofolate reductase family protein (.1) Lus10003052 [exp] 70 / 4e-15 AT5G38710 63 / 1e-13 Methylenetetrahydrofolate reductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0086 [poplar] [flax] FAD_oxidored PF01619 [poplar] [flax] Pro_dh Proline dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.004G106400.4 pacid=42794445 polypeptide=Potri.004G106400.4.p locus=Potri.004G106400 ID=Potri.004G106400.4.v4.1 annot-version=v4.1 ATGGCCCCAAAACTTCTGCCACCAAAACAACTCCAAAACCTCCGTTTCTTTATCACAAGGTCTCTCCACACCTCCTCCTCCTCGTCCTCGTCCTCTATAT CCACCTCCGCCGCAGTCTCCCCTCTAAACTTGGCTGAAAAACCTGAACCCGCTTTTCAAAAACCACTCACCGCCATTCAAGATCATGCAAAACCATCATC TATCCTAGACTTTCATGACCACCAAAAACTTTTCTCAAATTTGCCAACCACCAAACTCTTGCATGCATCTTTAAATCTTTACCTGGCTTCTATAAGTCCT ATGGTTGATTTTGGGATGTGGGTTATGAACTCTAGGCTTATGGAGACAGATAATATTTTACGTGCTGCTATGATAAAGACCGTAAGGCATACGTTCTTTG AACATTTTTGTGCTGGAGAAGATGTTGTTGAGGCAGGAAGGTGTATTAAGAAAGTTAATGAATCTGGTTTAAGAGGGATGTTGGTTTTCGCTGTTGAATA TACAGGTGATAATGATGCTTGTGATCAGAATTTGAAAGGGTTTCTTGATACTGTTCAATCTGCCATGTCTCTTCCTCCATCTTCTGTGAGCAGTGTGGTG GTAAAGATCACAGCAATTTGCCCCATAAGCTTGTTAGAGAGAGTTAGTGATTTGTTAAGGTGGCAACAGAGATATCCTTCTTTCAACCTTCCATGGAAAC AGAACAGTTTTCCACTTTTTTCTGATTCAAGCCCCTTGTATCATACTCTTAAAAAACCAGAACCATTAACCCCACAAGAAGAGCACGATCTCCAATTAGG CCAGGAGAGATTGTGGAAACTATGTGAAAAAAGTGTCCAGGCCAATATCCCATTAACGGTGGATGCAGAGAAAACAGCTATTCAACCTGCCATTGATTAC TTGACATATTCGGCAGCGATCAAGTACAACAAAGATGATAATCCCATTGTGTATGGCACGATTCAAGCCTACTTGAAAGATGCAAAAGAGAGATTGTTAC TTGCAACTAAAGCTGCTGACAAAATGAGAGTCCCAATGGGGTTTAAGGTAGTGAGGGGTGCTTACATGTCTAGTGAAAGTAAATTAGCCTCTGCATTAGG TTATGATTCTCCCATTCACAATAGTATTCAAGAGACACATGCTTGCTACAATGATTGTGCTTCGTTCATGCTTGAAAAGATCGCTAATAGCTCGGATGCA GTCATTCTTGCAACACATAATGTTGAATCAGGGAGATTGGCAGCAACGAAGGCACTAGACCTGGGGATTAGAAAGGGGAATCCAAAGCTTGAGTTTGCAC AGCTATATGGAATGTCAGATGCACTTTCATTTGGTTTAAGCAATGCAGGTTTTCTAGTTAGCAAGTACATGCCATATGGACCTGTTGAGAAGGTTATCCC TTACCTTCTAAGGAGGGCTGAAGAGAATAGGGGACTATTATCTACTTCAAGCATTGACAAGGAACTTATGAGGAAGGAGTTGAAGAGAAGACTTAAAGCT GCAATCTTCTGA
AA sequence Show only first row Show all	>Potri.004G106400.4 pacid=42794445 polypeptide=Potri.004G106400.4.p locus=Potri.004G106400 ID=Potri.004G106400.4.v4.1 annot-version=v4.1 MAPKLLPPKQLQNLRFFITRSLHTSSSSSSSSISTSAAVSPLNLAEKPEPAFQKPLTAIQDHAKPSSILDFHDHQKLFSNLPTTKLLHASLNLYLASISP MVDFGMWVMNSRLMETDNILRAAMIKTVRHTFFEHFCAGEDVVEAGRCIKKVNESGLRGMLVFAVEYTGDNDACDQNLKGFLDTVQSAMSLPPSSVSSVV VKITAICPISLLERVSDLLRWQQRYPSFNLPWKQNSFPLFSDSSPLYHTLKKPEPLTPQEEHDLQLGQERLWKLCEKSVQANIPLTVDAEKTAIQPAIDY LTYSAAIKYNKDDNPIVYGTIQAYLKDAKERLLLATKAADKMRVPMGFKVVRGAYMSSESKLASALGYDSPIHNSIQETHACYNDCASFMLEKIANSSDA VILATHNVESGRLAATKALDLGIRKGNPKLEFAQLYGMSDALSFGLSNAGFLVSKYMPYGPVEKVIPYLLRRAEENRGLLSTSSIDKELMRKELKRRLKA AIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38710			Methylenetetrahydrofolate redu...		Potri.004G106400 [exp]	0	1
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Potri.001G148900 [exp]	1.41	0.9496	Pt-BMY.1
AT1G35520	ARF	ARF15	auxin response factor 15 (.1)		Potri.012G012950 [exp]	4.58	0.9145
AT2G03530		ATUPS2, UPS2	ARABIDOPSIS THALIANA UREIDE PE...		Potri.008G095600 [exp]	5.19	0.9461
AT1G32740			SBP (S-ribonuclease binding pr...		Potri.003G085800 [exp]	5.47	0.8779
AT4G01500	B3	NGA4	NGATHA4, AP2/B3-like transcrip...		Potri.012G013700 [exp]	6.32	0.9234
AT3G47960			Major facilitator superfamily ...		Potri.017G076800 [exp]	7.07	0.9163
AT5G60570			Galactose oxidase/kelch repeat...		Potri.019G042100 [exp]	7.21	0.8810
AT3G12400		ELC, ATELC	Ubiquitin-conjugating enzyme/R...		Potri.003G191100 [exp]	7.48	0.8980
AT2G46870	B3	NGA1	NGATHA1, AP2/B3-like transcrip...		Potri.001G452200 [exp]	8.94	0.9054
AT4G27020			unknown protein		Potri.001G424500 [exp]	9.00	0.9107

Compare expression of checked genes

Potri.004G106400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.