Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02450 657 / 0 cell division protein ftsH, putative (.1) AT5G15250 268 / 2e-80 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT5G42270 265 / 3e-79 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT1G50250 265 / 7e-79 FTSH1 FTSH protease 1 (.1) AT2G30950 260 / 2e-77 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT1G06430 258 / 1e-76 FTSH8 FTSH protease 8 (.1) AT5G58870 253 / 9e-74 FTSH9 FTSH protease 9 (.1) AT3G47060 253 / 1e-73 FTSH7 FTSH protease 7 (.1) AT2G26140 250 / 2e-73 FTSH4 FTSH protease 4 (.1) AT1G07510 250 / 7e-73 FTSH10 FTSH protease 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G012000 [exp] 267 / 7e-80 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 266 / 7e-80 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.002G215100 [exp] 266 / 2e-79 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.002G220366 [exp] 250 / 2e-78 AT1G06430 405 / 1e-138 FTSH protease 8 (.1) Potri.005G249200 [exp] 260 / 3e-77 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.014G139500 [exp] 260 / 4e-77 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.001G249100 [exp] 260 / 2e-76 AT5G58870 997 / 0.0 FTSH protease 9 (.1) Potri.009G033600 [exp] 256 / 8e-75 AT1G07510 1114 / 0.0 FTSH protease 10 (.1) Potri.006G227700 [exp] 251 / 7e-74 AT2G26140 1066 / 0.0 FTSH protease 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034097 [exp] 688 / 0 AT3G02450 713 / 0.0 cell division protein ftsH, putative (.1) Lus10003049 [exp] 667 / 0 AT3G02450 685 / 0.0 cell division protein ftsH, putative (.1) Lus10012277 [exp] 266 / 7e-82 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10021824 [exp] 266 / 2e-79 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10016003 [exp] 265 / 5e-79 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001054 [exp] 258 / 1e-76 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001420 [exp] 258 / 8e-76 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001203 [exp] 257 / 5e-75 AT5G58870 1093 / 0.0 FTSH protease 9 (.1) Lus10005868 [exp] 256 / 1e-74 AT5G58870 1105 / 0.0 FTSH protease 9 (.1) Lus10018210 [exp] 253 / 1e-73 AT5G58870 1049 / 0.0 FTSH protease 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06480 [poplar] [flax] FtsH_ext FtsH Extracellular CL0023 [poplar] [flax] P-loop_NTPase PF07728 [poplar] [flax] AAA_5 AAA domain (dynein-related subfamily)
Representative CDS sequence Show only first row Show all	>Potri.004G106500.3 pacid=42794031 polypeptide=Potri.004G106500.3.p locus=Potri.004G106500 ID=Potri.004G106500.3.v4.1 annot-version=v4.1 ATGGCTTCTTTTTCTGCTGTTTGCAATAACGGGTTCTTGAATTTTAAACTGAACTCTGGAGTCAATAATGGAAATACTAAATCTTTGAAGAGAAATTCAA CTATTTGTTACAGTCCAGTGTTGATCCCTTCTTTGGGACTTTGCAGTGCTGGCAAACTCCAACATTTGTTGCTTTGGAGGAGCAAGTTTAGGTCATCATT TTATGATGGAAAAACCGGGGTTCATTTATCGGGGTTTTGTGGTGGTTGTAAGTCTCAAAATGGGATGTCTTGTAAGAGCTCATTTAGGCCATTGAGCAGT GAAAAAAGTAGAGATGAAGAGAGCCATTTGAGGAAAAGAGGAAATGGTAATTTGAGGAAGAGGTTTTCACTTAGATTGAAAACAAGACTGCGGCTATTGA AGATAAGATTGAAGGGAGTTTCGATTAGGTCGATGTTGAATGATTTTGGAATGTTCTTGAGAAGGAATATAAGAAGAATGACACTTTACACTTCAATTTC TGTTGCATTGGGAATGTGCTACTTGTTTTTGAGATTAACTGCGTTGCCATCTCCAAAGATTGTTCCTTATTCAGAATTGATAGCCAGCCTTCAAAATGGC TATGTTACAAACGTCTTATTTGAAGAGGGATCTCGTCGTATATACTATAACACAGACTCTGTGGGTACTGAAAACTCAGAAGACAAATCTTCAGTATTAA ATCTTCCAAATGAGAATGCAGCTGAAACAGTTGCAATAGAACGTGTTGTGAGCAAAACTGGTCTGGCATCAAGGGTAGATGTATTTAAGAAATTTTCAAG GCCACGAGCTTCCACCCCAGAGTGGCAATTTTCTACAAGGAAAGTAGATCGTGACGAGAAATTTCTTCTTACTTTGATGAGAGCAAAGGGAACAGCATAC AGCTCAGCCCCTCAATCAATTCTGATGTCAATAAGGAGTTTGCTTATAACTATAATATCTTTGTGGATTCCCTTGACTCCTATGATGTGGCTCCTCTATC GCCAACTTTCTGCTGCTAATAGCCCAGCACGAAAGAGGCGATCAAATAATCAGGAAGTCACTTTTGATGATGTGGAGGGTGTTGATGTTGCTAAGATAGA ACTCATGGAGATAGTTTTGTGTCTGCAAGGAGCAATGAATTATCAAAAACTGGGAGCAAAGTTACCTAGAGGTGTATTGCTGGTTGGTCCCCCAGGAACA GGGAAGACATTACTGGCACGTGCAGTTGCTGGAGAAGCAGGAGTACCATTTTTCAGTGTCTCTGCCAGTGAATTTGTGGAGTTGTTTGTTGGTAGAGGAG CAGCTCGGATTAGAGATCTCTTTAATGCAGCAAGAAAATCTTCTCCGTCAATTATATTCATCGATGAACTTGATGCAGTTGGGGGAAAACGTGGTAGAAG TTTCAATGACGAACGAGATCAAACACTAAACCAGTTGCTGACTGAAATGGATGGTTTTGAGTCAGAAATGAAAGTGGTGGTTATTGCAGCAACTAATAGG CCGGAAGCTTTGGATCCAGCCCTTTGCCGGCCTGGTCGCTTTTCAAGAAAGGTAGTTGTTGGAGAACCAGATGAAGAAGGAAGGAGAAAGATCTTGGCTG TACATTTGAGAGGGGTTCCTATAGATGAAGATGCAGATCTTATCTGTAATCTAGTTGCTTCATTGACACCAGGGTTTGTAGGTGCTGATCTTGCAAACAT CATTAATGAAGCTGCTTTACTTGCTGCTCGAAGAGGTGGAGACATTGTGACAAGGGAAGATGTAATGGAAGCAATTGAAAGAGCAAAGTTTGGAATCGGG GACAGGCAACTAAGGCCCAGTACAATAAGCAAAGAGCTGGGCAAATTGTTCCCATGGATTCCTTCGTTGATGGGAACGATTGACACAAGACAGGATGGTT TGCAAGGCTCTTTAGGTTACCAGACCCTGAGCTGA
AA sequence Show only first row Show all	>Potri.004G106500.3 pacid=42794031 polypeptide=Potri.004G106500.3.p locus=Potri.004G106500 ID=Potri.004G106500.3.v4.1 annot-version=v4.1 MASFSAVCNNGFLNFKLNSGVNNGNTKSLKRNSTICYSPVLIPSLGLCSAGKLQHLLLWRSKFRSSFYDGKTGVHLSGFCGGCKSQNGMSCKSSFRPLSS EKSRDEESHLRKRGNGNLRKRFSLRLKTRLRLLKIRLKGVSIRSMLNDFGMFLRRNIRRMTLYTSISVALGMCYLFLRLTALPSPKIVPYSELIASLQNG YVTNVLFEEGSRRIYYNTDSVGTENSEDKSSVLNLPNENAAETVAIERVVSKTGLASRVDVFKKFSRPRASTPEWQFSTRKVDRDEKFLLTLMRAKGTAY SSAPQSILMSIRSLLITIISLWIPLTPMMWLLYRQLSAANSPARKRRSNNQEVTFDDVEGVDVAKIELMEIVLCLQGAMNYQKLGAKLPRGVLLVGPPGT GKTLLARAVAGEAGVPFFSVSASEFVELFVGRGAARIRDLFNAARKSSPSIIFIDELDAVGGKRGRSFNDERDQTLNQLLTEMDGFESEMKVVVIAATNR PEALDPALCRPGRFSRKVVVGEPDEEGRRKILAVHLRGVPIDEDADLICNLVASLTPGFVGADLANIINEAALLAARRGGDIVTREDVMEAIERAKFGIG DRQLRPSTISKELGKLFPWIPSLMGTIDTRQDGLQGSLGYQTLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02450			cell division protein ftsH, pu...		Potri.004G106500 [exp]	0	1
AT1G52870			Peroxisomal membrane 22 kDa (M...		Potri.011G123700 [exp]	2.82	0.9770
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.005G012600 [exp]	3.16	0.9707
AT3G24800		PRT1	proteolysis 1 (.1)		Potri.001G049300 [exp]	3.74	0.9661
AT2G34460			NAD(P)-binding Rossmann-fold s...		Potri.011G079600 [exp]	4.00	0.9658
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Potri.001G144500 [exp]	4.47	0.9694	NAP6.2
AT2G04360			unknown protein		Potri.014G169200 [exp]	4.89	0.9714
AT5G25752		ATRBL11	ARABIDOPSIS RHOMBOID-LIKE PROT...		Potri.018G037300 [exp]	5.19	0.9697
AT2G04530		CPZ, TRZ2	TRNASE Z 2, Metallo-hydrolase/...		Potri.014G160600 [exp]	6.63	0.9761
AT2G41120			unknown protein		Potri.006G025200 [exp]	8.36	0.9701
AT1G65260		VIPP1, PTAC4	VESICLE-INDUCING PROTEIN IN PL...		Potri.006G123600 [exp]	9.00	0.9725

Compare expression of checked genes

Potri.004G106500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.