Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25180 514 / 1e-179 CYP82G1 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) AT4G31940 493 / 5e-171 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT4G31970 487 / 9e-169 CYP82C2, JAH1 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) AT4G31950 444 / 8e-152 CYP82C3 "cytochrome P450, family 82, subfamily C, polypeptide 3", cytochrome P450, family 82, subfamily C, polypeptide 3 (.1) AT2G25160 366 / 2e-121 CYP82F1 "cytochrome P450, family 82, subfamily F, polypeptide 1", cytochrome P450, family 82, subfamily F, polypeptide 1 (.1) AT5G07990 304 / 3e-97 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G37310 290 / 5e-92 CYP81H1 "cytochrome P450, family 81, subfamily H, polypeptide 1", cytochrome P450, family 81, subfamily H, polypeptide 1 (.1) AT4G37360 282 / 4e-89 CYP81D2 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) AT4G37320 278 / 2e-87 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT4G37370 276 / 6e-87 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G125300 [exp] 844 / 0 AT3G25180 522 / 0.0 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Potri.014G037500 [exp] 543 / 0 AT4G31940 717 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.016G008500 [exp] 534 / 0 AT4G31940 499 / 2e-173 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.001G334700 [exp] 503 / 6e-175 AT4G31970 459 / 1e-157 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Potri.014G038100 [exp] 490 / 1e-169 AT4G31940 520 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038000 [exp] 487 / 2e-168 AT4G31940 514 / 5e-179 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038200 [exp] 484 / 3e-167 AT4G31940 501 / 7e-174 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037900 [exp] 479 / 1e-165 AT4G31970 481 / 2e-166 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Potri.009G108600 [exp] 474 / 3e-164 AT4G31940 555 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038203 [exp] 584 / 0 AT3G25180 495 / 9e-172 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Lus10007837 [exp] 471 / 3e-162 AT4G31940 575 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10032745 [exp] 454 / 1e-155 AT4G31940 571 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10038200 [exp] 449 / 7e-154 AT4G31940 451 / 2e-154 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025902 [exp] 448 / 2e-153 AT4G31940 449 / 1e-153 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10011657 [exp] 447 / 2e-148 AT4G31940 479 / 3e-160 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10032743 [exp] 434 / 1e-147 AT4G31940 460 / 1e-157 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10035635 [exp] 425 / 3e-144 AT4G31940 470 / 8e-162 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025901 [exp] 417 / 6e-141 AT4G31940 426 / 2e-144 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10011658 [exp] 416 / 1e-140 AT4G31940 510 / 9e-178 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.004G106600.1 pacid=42795281 polypeptide=Potri.004G106600.1.p locus=Potri.004G106600 ID=Potri.004G106600.1.v4.1 annot-version=v4.1 ATGATTCTTGAGGCTCTCATTTTGGTATTTCTTTATGGTTTCTGGAAAATCCTAGCCAGAAATAGTGAAGGCAAAAAATCAACCAGAGCCCCTGAACCGT CCGGGGCATGGCCGTTATTTGGTCACCTCCCTAGTCTAGTTGGCAAAGACCCAGCATGTAAAACCCTTGGAGCCATTGCCGATAAATATGGCCCTATTTA CTCACTCAAGTTCGGCATTCATCGAACCCTAGTGGTCAGTAGTTGGGAAACAGTGAAGGATTGCTTAAACACCAATGACAGAGTTTTGGCTACTAGAGCA GGCATAGCAGCAGGGAAACATATGTTTTATAACAACGCAGCTTTTGCATTAGCCCCGTACGGACAGTATTGGCGAGATGTCAGAAAGCTGGCCACTCTTC AGCTTCTATCAAATCAGCGGCTTGAAATGCTTAAGCATGTCCGTGTATCAGAAGTAGACACGTTCATCAAAGGTTTGCACAGTTTTTATGCAGGAAATGT GGACTCCCCTGCGAAGGTGAATATAAGCAAATTGTTGGAAAGCTTGACGTTCAACATAAACCTTAGAACAATAGTCGGGAAGCGATATTGCAGCAGCACA TATGACAAGGAGAACAGCGAGCCCTGGCGTTACAAAAAAGCCATAAAAAAAGCCTTGTATCTGAGTGGGATTTTTGTAATGTCGGATGCGATTCCATTTC TTGAATGGCTTGATTATCAGGGGCATGTAAGTGCTATGAAGAAGACTGCCAAGGAACTTGATGCCGTGATACGAAATTGGCTGGAAGAACATCTTAAGAA AAAAATAGATGGCGAATTGGGAAGCGATCGTGAGAGCGACTTCATGGACGTGATGATCTCTAACCTTGCTGAAGGTCCTGATAGGATTTCTGGCTATTCG CGTGATGTTGTCATCAAGGCAACAGCTTTGATTCTCACCCTCACAGGAGCAGGAAGCACAGCAACTACATTAGTTTGGACGCTGTCCCTATTGCTAAACA ACCCAACCGTGCTAAAGGCTGCTCAAGAAGAGCTGGACAAGCAAGTAGGAAGAGAAAGATGGGTGGAAGAATCAGATATACAGAACCTCAAGTACCTCCA AGCAATTGTGAAAGAAACCCTGCGCTTATACCCTCCAGGCCCCTTAACCGGAATACGTGAGGCCATGGAAGATTGTTCTATTGGTGGCTATGATGTTCCT AAGGGCACTCGACTAGTAGTTAACATATGGAAGCTACATCGAGACCCTCGTGTGTGGAAAAACCCAAACGAGTTTAAACCTGACAGGTTCTTGACAACCC ATGCTGATCTTGATTTTAGGGGTCAAAATATGGAGTTCATTCCTTTTAGCTCTGGGAGAAGATCTTGCCCTGCCATAAATCTTGGCTTGATAGTGGTTCA TCTGACACTTGCTAGGATCCTTCAGGGTTTTGATTTAACAACTGTTGCAGGCTTGCCTGTGGACATGATTGAAGGCCCAGGCATTGCCTTACCGAAGGAG ACCCCTCTCGAAGTTGTCATCAAACCACGCCTAGGATTGGAGCTCTACTAG
AA sequence Show only first row Show all	>Potri.004G106600.1 pacid=42795281 polypeptide=Potri.004G106600.1.p locus=Potri.004G106600 ID=Potri.004G106600.1.v4.1 annot-version=v4.1 MILEALILVFLYGFWKILARNSEGKKSTRAPEPSGAWPLFGHLPSLVGKDPACKTLGAIADKYGPIYSLKFGIHRTLVVSSWETVKDCLNTNDRVLATRA GIAAGKHMFYNNAAFALAPYGQYWRDVRKLATLQLLSNQRLEMLKHVRVSEVDTFIKGLHSFYAGNVDSPAKVNISKLLESLTFNINLRTIVGKRYCSST YDKENSEPWRYKKAIKKALYLSGIFVMSDAIPFLEWLDYQGHVSAMKKTAKELDAVIRNWLEEHLKKKIDGELGSDRESDFMDVMISNLAEGPDRISGYS RDVVIKATALILTLTGAGSTATTLVWTLSLLLNNPTVLKAAQEELDKQVGRERWVEESDIQNLKYLQAIVKETLRLYPPGPLTGIREAMEDCSIGGYDVP KGTRLVVNIWKLHRDPRVWKNPNEFKPDRFLTTHADLDFRGQNMEFIPFSSGRRSCPAINLGLIVVHLTLARILQGFDLTTVAGLPVDMIEGPGIALPKE TPLEVVIKPRLGLELY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25180		CYP82G1	cytochrome P450, family 82, su...		Potri.004G106600 [exp]	0	1
AT1G07650			Leucine-rich repeat transmembr...		Potri.011G073366 [exp]	3.46	0.9555
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073166 [exp]	3.87	0.9509
AT1G29730			Leucine-rich repeat transmembr...		Potri.011G072991 [exp]	3.87	0.9666
AT5G23730		EFO2, RUP2	REPRESSOR OF UV-B PHOTOMORPHOG...		Potri.012G140200 [exp]	4.47	0.9312
AT1G29730			Leucine-rich repeat transmembr...		Potri.011G072591 [exp]	12.16	0.9504
AT1G29730			Leucine-rich repeat transmembr...		Potri.011G073391 [exp]	19.59	0.9372
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Potri.013G120100 [exp]	20.73	0.9460
AT3G14240			Subtilase family protein (.1)		Potri.018G094400 [exp]	21.63	0.9284
AT5G14700			NAD(P)-binding Rossmann-fold s...		Potri.017G110500 [exp]	22.27	0.9021
AT5G01870			Bifunctional inhibitor/lipid-t...		Potri.016G136000 [exp]	24.53	0.9384	Pt-LTP2.2

Compare expression of checked genes

Potri.004G106600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.