Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15930 584 / 0 PAM1 plant adhesion molecule 1 (.1) AT3G02460 577 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT3G07890 140 / 3e-38 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT2G37290 126 / 1e-31 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT3G55020 97 / 1e-21 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G39280 90 / 2e-19 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT2G30710 77 / 3e-15 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT4G13730 62 / 1e-10 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) AT1G04830 61 / 6e-10 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G53570 59 / 2e-09 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G109000 [exp] 628 / 0 AT5G15930 575 / 0.0 plant adhesion molecule 1 (.1) Potri.002G218100 [exp] 149 / 2e-41 AT3G07890 696 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.014G163400 [exp] 149 / 3e-41 AT3G07890 719 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.006G133400 [exp] 126 / 1e-31 AT2G37290 875 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.008G046600 [exp] 106 / 5e-25 AT3G55020 965 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.010G215000 [exp] 103 / 5e-24 AT3G55020 1039 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.007G134200 [exp] 76 / 5e-15 AT2G30710 692 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.001G316700 [exp] 70 / 5e-13 AT4G13730 586 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.017G057100 [exp] 66 / 1e-11 AT4G13730 602 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003047 [exp] 611 / 0 AT3G02460 577 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10034099 [exp] 601 / 0 AT3G02460 573 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10006410 [exp] 148 / 5e-41 AT3G07890 701 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10012363 [exp] 148 / 6e-41 AT3G07890 698 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10014020 [exp] 108 / 1e-25 AT2G37290 801 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10040349 [exp] 98 / 5e-22 AT3G55020 895 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10023472 [exp] 96 / 3e-21 AT3G55020 865 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10041425 [exp] 95 / 4e-21 AT3G55020 919 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10008148 [exp] 77 / 4e-15 AT2G30710 625 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10019370 [exp] 74 / 2e-14 AT2G30710 568 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [poplar] [flax] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Potri.004G106700.2 pacid=42794236 polypeptide=Potri.004G106700.2.p locus=Potri.004G106700 ID=Potri.004G106700.2.v4.1 annot-version=v4.1 ATGGAGAAGAAAATAATAGATGACTATGAACCAGGGCCACTTCCTTCGCCAAGAAAGATGGATAGATTTGGTTTTCTAAAGCAAGAGATTAATAATCCTC CTGATGGTTTAGCCAAGGGAAGGGAGGAAAGAAGGGTAAGAAAATGGAGGAAGATGATTGGGGTTGGAGGGAGTGATTGGAAGCATTATGTTCGAAGAAA ACCTCATGTTGTTAAGAGGCGCATAAGGAAAGGAATCCCTGACTGTTTAAGGGGTCTTGTTTGGCAGTTGATTTCTGGAAGTCGAGACCTTTTACTGATG AACCCTGGGGTTTATGAGCAACTAGTTATATACGAGACATCAGCATCAGAGCTGGATATAATTCGTGATATTTCTCGGACCTTCCCTTCACATGTTTTCT TCCAGCAGAGACATGGTCCAGGTCAAAGGTCTCTCTACAATGTTTTGAAGGCTTACTCTGTGTATGATAGAGATGTTGGATATGTTCAGGGTATGGGGTT TTTAGCTGGTTTGCTACTCCTTTATATGAGTGAAGAGGATGCATTTTGGTTGTTGGTTGCATTGCTGAAAGGAGCAGTCCATGCTCCAATGGAAGGATTG TATCAGGTGGGTCTGCCTCTTGTTCAACAATATTTGTGTCTGTTTGACCGCTTGATGAAGGAGCATATGCCAAAACTAGGAGAGCATTTTACCCAAGAAA TGATAAATCCTAGCATGTATGCAAGCCAGTGGTTTATAACTGTTTTCTCATACTCTTTTCCATTCCACTTGGCTCTTCGAATTTGGGATGTCTTCCTGTA CGAGGGTGTTAAAATTGTTTTCAAAGTGGGTCTGGCTCTGTTAAAATATCGCCATGATGACTTGGTCAAATTGCCCTTTGAAAAACTTATACATGCTTTG CGTAATTTCCCCGATGATGCAATGGATCCAGATACATTATTACCTATGGCGTACTCCATCAAGGTGTCCAGGCGATTGGAAGAACTGAAACAGGAGTATA ACAAGAAGGATGGAAAGCCAAGTCTGTCTATAGAAATTAAGGGGAATCAAAAGCAGGTGCAATGA
AA sequence Show only first row Show all	>Potri.004G106700.2 pacid=42794236 polypeptide=Potri.004G106700.2.p locus=Potri.004G106700 ID=Potri.004G106700.2.v4.1 annot-version=v4.1 MEKKIIDDYEPGPLPSPRKMDRFGFLKQEINNPPDGLAKGREERRVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLM NPGVYEQLVIYETSASELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGL YQVGLPLVQQYLCLFDRLMKEHMPKLGEHFTQEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLYEGVKIVFKVGLALLKYRHDDLVKLPFEKLIHAL RNFPDDAMDPDTLLPMAYSIKVSRRLEELKQEYNKKDGKPSLSIEIKGNQKQVQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15930		PAM1	plant adhesion molecule 1 (.1)		Potri.004G106700 [exp]	0	1
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G037400 [exp]	9.59	0.6803
AT2G33980		ATNUDT22	nudix hydrolase homolog 22 (.1...		Potri.004G053300 [exp]	10.67	0.6167
AT2G24190		SDR2	short-chain dehydrogenase/redu...		Potri.009G158200 [exp]	16.58	0.6689
AT1G44770			unknown protein		Potri.002G084900 [exp]	20.32	0.6753
AT3G29060			EXS (ERD1/XPR1/SYG1) family pr...		Potri.017G086800 [exp]	31.98	0.6410
AT2G36290			alpha/beta-Hydrolases superfam...		Potri.010G237700 [exp]	49.93	0.6447
AT2G35380			Peroxidase superfamily protein...		Potri.001G145800 [exp]	54.96	0.6588
AT5G05930		ATGC1	ARABIDOPSIS GUANYLYL CYCLASE 1...		Potri.008G062100 [exp]	67.08	0.5793
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Potri.004G019500 [exp]	68.08	0.6325
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.010G054100 [exp]	85.42	0.6012

Compare expression of checked genes

Potri.004G106700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.