Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SAMDC.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02470 478 / 5e-170 SAMDC S-adenosylmethionine decarboxylase (.1.3.4) AT5G15950 475 / 5e-169 Adenosylmethionine decarboxylase family protein (.1.2) AT3G25570 444 / 1e-156 Adenosylmethionine decarboxylase family protein (.1.2) AT5G18930 247 / 2e-79 BUD2, SAMDC4 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G108800 [exp] 635 / 0 AT3G02470 481 / 3e-171 S-adenosylmethionine decarboxylase (.1.3.4) Potri.010G133900 [exp] 511 / 0 AT3G25570 478 / 3e-170 Adenosylmethionine decarboxylase family protein (.1.2) Potri.018G101500 [exp] 373 / 5e-128 AT3G02470 358 / 2e-122 S-adenosylmethionine decarboxylase (.1.3.4) Potri.008G198800 [exp] 254 / 3e-82 AT5G18930 461 / 1e-163 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) Potri.010G028500 [exp] 252 / 2e-81 AT5G18930 451 / 7e-160 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000156 [exp] 489 / 2e-173 AT3G25570 486 / 3e-172 Adenosylmethionine decarboxylase family protein (.1.2) Lus10034412 [exp] 484 / 2e-171 AT3G25570 481 / 3e-170 Adenosylmethionine decarboxylase family protein (.1.2) Lus10035083 [exp] 477 / 1e-169 AT3G25570 473 / 2e-168 Adenosylmethionine decarboxylase family protein (.1.2) Lus10019146 [exp] 479 / 2e-169 AT3G25570 478 / 3e-169 Adenosylmethionine decarboxylase family protein (.1.2) Lus10031919 [exp] 476 / 3e-169 AT3G25570 470 / 4e-167 Adenosylmethionine decarboxylase family protein (.1.2) Lus10040973 [exp] 376 / 2e-129 AT3G25570 372 / 9e-128 Adenosylmethionine decarboxylase family protein (.1.2) Lus10021951 [exp] 249 / 4e-80 AT5G18930 361 / 3e-124 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) Lus10041241 [exp] 240 / 7e-77 AT5G18930 363 / 2e-125 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01536 [poplar] [flax] SAM_decarbox Adenosylmethionine decarboxylase
Representative CDS sequence Show only first row Show all	>Potri.004G106800.5 pacid=42795381 polypeptide=Potri.004G106800.5.p locus=Potri.004G106800 ID=Potri.004G106800.5.v4.1 annot-version=v4.1 ATGGCACAGCCGGTCTCTGCAATCGGATTTGAAGGTTACGAAAAAAGGCTTGAAATTTGCTTTTTAGAGCCTGGCTTCTTTTCTGACCCTGAAGGAAAGG GCCTCAGGTCTCTGTCCAAGGCTCAATTGGACGAGATTCTCAAACCAGCTGAATGCACTATAGTTGATTCGCTTTCAAATGACGAGGTTGATTCGTATGT TCTGTCGGAATCCAGTCTCTTTGTATACCCTTACAAAGTTATCATCAAAACTTGTGGGACTACTAAACTGCTCCTTTCGATCCCAGTGATCCTTGAGCTC GCTGATGCCCTTTCACTCACTGTATGTTCTGTGAGGTACACTCGTGGGAGCTTCATATGTCCCGGGGCTCAGCCATTTCCGCATCGTAACTTCTGTGAGG AGGTAACTGTCCTCGATGGCCATTTCAGTAAATTTGGTTTAGAGAGTGTGGCATATGTGATGGGAAGTCCCAACTCAACTCAGAAATGGCATGTTTACTC TGCTGCTGCTGGTATGAAGAGCCATTCTGGCCCTGTTTACACGCTGGAAATGTGCATGACTGGTTTGGACAGGAAGCGAGCATCTGTTTTCTACAAAACA CACGCCAGTTCAGCTACTGTGATGACTGAGGATTCTGGAATAAGGAAGATCCTTCCGCAATCTGAGATCTGCGATTTTGATTTTGACCCTTGTGGTTACT CTATGAATGCCATTGAAGGGAGTGCAATTTCCACAATCCATGTCACCCCAGAAGATGGTTTCAGCTATGCAAGTTTTGAGGCTGTGGGTTATGATTTTCA AGATTTAAATTTGAGGCAGCTGCTTTATAGGGTTTTGGTTTGCTTTGAACCGACCGAGTTCTCCATTGCATTGCATTCTAATGTTGAGTGTGACGAACTT GGAGCGATGTTTTCCCTGGATGTGAAAGGTTACTCTTGTGGAGGGGGGAACTATGAAATGCTCGGGAAGGGTGGATCGATTGTCTACCACAGCTTTGCAG CGACTGGAGGCTGCTCATCTCCCAGGTCAATCCTGAAATGTTGTTGGAGTGAGGATGAGAAGGACGAGGAAGCTGAAGAGAAGTAG
AA sequence Show only first row Show all	>Potri.004G106800.5 pacid=42795381 polypeptide=Potri.004G106800.5.p locus=Potri.004G106800 ID=Potri.004G106800.5.v4.1 annot-version=v4.1 MAQPVSAIGFEGYEKRLEICFLEPGFFSDPEGKGLRSLSKAQLDEILKPAECTIVDSLSNDEVDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPVILEL ADALSLTVCSVRYTRGSFICPGAQPFPHRNFCEEVTVLDGHFSKFGLESVAYVMGSPNSTQKWHVYSAAAGMKSHSGPVYTLEMCMTGLDRKRASVFYKT HASSATVMTEDSGIRKILPQSEICDFDFDPCGYSMNAIEGSAISTIHVTPEDGFSYASFEAVGYDFQDLNLRQLLYRVLVCFEPTEFSIALHSNVECDEL GAMFSLDVKGYSCGGGNYEMLGKGGSIVYHSFAATGGCSSPRSILKCCWSEDEKDEEAEEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02470		SAMDC	S-adenosylmethionine decarboxy...		Potri.004G106800 [exp]	0	1	Pt-SAMDC.3
AT3G02470		SAMDC	S-adenosylmethionine decarboxy...		Potri.017G108800 [exp]	2.00	0.7958	SAMDC.4
AT5G54470	CO		B-box type zinc finger family ...		Potri.001G414700 [exp]	3.46	0.8266
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Potri.006G100900 [exp]	5.91	0.7293
AT1G19980			cytomatrix protein-related (.1...		Potri.002G022200 [exp]	14.69	0.7485
AT4G13310		CYP71A20	"cytochrome P450, family 71, s...		Potri.003G192300 [exp]	22.71	0.7842
AT4G38960	CO		B-box type zinc finger family ...		Potri.007G015200 [exp]	24.00	0.7417
AT3G25910			Protein of unknown function (D...		Potri.006G154300 [exp]	24.08	0.7442
					Potri.012G031150 [exp]	28.28	0.7675
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.004G192000 [exp]	28.56	0.7114
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Potri.011G026700 [exp]	31.11	0.7430

Compare expression of checked genes

Potri.004G106800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.