Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02380 302 / 6e-101 CO ATCOL2, COL2 CONSTANS-like 2 (.1) AT5G15840 300 / 6e-100 CO FG, CO CONSTANS, B-box type zinc finger protein with CCT domain (.1.2) AT5G15850 274 / 6e-90 CO COL1, ATCOL1 CONSTANS-like 1 (.1) AT2G24790 162 / 2e-47 CO COL3, ATCOL3 CONSTANS-like 3 (.1.2) AT5G24930 162 / 6e-46 CO COL4, ATCOL4 CONSTANS-like 4 (.1) AT5G57660 103 / 7e-25 CO COL5, ATCOL5 CONSTANS-like 5 (.1) AT1G78600 72 / 4e-14 CO BBX22, DBB3, STH3, LZF1 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) AT2G47890 70 / 2e-13 CO COL13 B-box type zinc finger protein with CCT domain (.1.2) AT1G06040 68 / 5e-13 CO BBX24, STO SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) AT1G75540 68 / 1e-12 CO LHUS, AtBBX21, STH2 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G107500 [exp] 486 / 7e-173 AT3G02380 330 / 7e-112 CONSTANS-like 2 (.1) Potri.006G267700 [exp] 194 / 9e-59 AT5G24930 361 / 1e-123 CONSTANS-like 4 (.1) Potri.018G013800 [exp] 192 / 3e-58 AT5G24930 348 / 2e-118 CONSTANS-like 4 (.1) Potri.018G096084 [exp] 178 / 2e-52 AT5G57660 283 / 5e-93 CONSTANS-like 5 (.1) Potri.006G173600 [exp] 174 / 5e-51 AT5G57660 315 / 1e-105 CONSTANS-like 5 (.1) Potri.014G134601 [exp] 94 / 1e-21 AT2G47890 174 / 4e-53 B-box type zinc finger protein with CCT domain (.1.2) Potri.017G028300 [exp] 72 / 2e-14 AT2G31380 273 / 4e-93 salt tolerance homologue (.1) Potri.017G028301 [exp] 72 / 2e-14 AT1G06040 274 / 3e-93 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) Potri.007G130100 [exp] 71 / 7e-14 AT1G06040 264 / 1e-89 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020105 [exp] 194 / 9e-59 AT5G24930 398 / 6e-138 CONSTANS-like 4 (.1) Lus10026909 [exp] 192 / 6e-58 AT5G24930 404 / 3e-140 CONSTANS-like 4 (.1) Lus10005106 [exp] 94 / 2e-21 AT3G02380 194 / 6e-59 CONSTANS-like 2 (.1) Lus10015619 [exp] 91 / 4e-20 AT5G57660 210 / 3e-64 CONSTANS-like 5 (.1) Lus10026238 [exp] 82 / 1e-17 AT5G24930 163 / 9e-48 CONSTANS-like 4 (.1) Lus10042431 [exp] 81 / 2e-17 AT5G24930 180 / 7e-55 CONSTANS-like 4 (.1) Lus10040900 [exp] 76 / 8e-15 AT2G47890 289 / 1e-95 B-box type zinc finger protein with CCT domain (.1.2) Lus10025579 [exp] 70 / 2e-13 AT1G06040 297 / 2e-102 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) Lus10027041 [exp] 70 / 2e-13 AT1G06040 298 / 1e-102 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) Lus10001806 [exp] 71 / 4e-13 AT1G28050 298 / 1e-96 B-box type zinc finger protein with CCT domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00643 [poplar] [flax] zf-B_box B-box zinc finger
Representative CDS sequence Show only first row Show all	>Potri.004G108320.1 pacid=42796642 polypeptide=Potri.004G108320.1.p locus=Potri.004G108320 ID=Potri.004G108320.1.v4.1 annot-version=v4.1 ATGTTGAAGCAAGAGAGTAGTGGTGGCGGAGGTGGTGACAACAGGGCTCGTGTATGTGACACGTGTCGTGCAGCACCTTGCACTGTGTACTGCAGGGCTG ACTCGGCATACTTGTGTGCCGGGTGTGATGCCCGTGTGCACGCAGCCAATCGTGTGGCATCACGCCATGAGCGCGTATCGGTGTGCGAGGCGTGTGAGCG TGCTCCGGCTGCCTTGTTATGCAAGGCGGATGCGGCGTCTCTCTGCACTGCCTGTGACGCAGATATCCATTCTGCAAACCCACTAGCACGCCGCCACCAG CGTGTTCCAATTCTGCCCATTTCCGGTTGCCTTCACGGTTCCCCAGTAGGGCCTGCAGCCGGTGAGACTGAAGACCGGTTCACGACACAAGAGGGAGAAG AGACAATAAGTGAGGAGGAGGAGGATGAAGCTGCTTCATGGTTGTTACTAAATCCTGTGAAGAACAGCAAGAACCAGAATAATAATGGCTTCTTGTTTGG TGGGGAGGTTGATGAGTATTTGGATCTTGTGGAGTACAACTCATGTACTGAAAATCAATGCTCTGATCAGTACAATCAGCAACACTACTGTGTTCCGCCA AAGAGTTATGGGGGTGACCGTGCTGTGCCAATTCAGTATGGAGAAGGAAAGGATCATCAACAGCAACGGCAGTATCACAATTTTCAGTTGGGATTGGAGT ATGAGCCCTCAAAAGCTGCTTGCAGCTACAATGGTTCGATCAGTCAAAGTGTATCCATGTCATCCATGGATGTTGGAGTGGTGCCAGAATCAACAATGAG CGAGATCTCAATCTCGCAACATAGACCTCCAAAAGGGACAATGGAACTTTTCTCCAGCACTGCTATCCAGATGCCATCTCAACTTAGTCCAATGGATAGG GAGGCAAGAGTCCTGAGATACAGAGAGAAAAAGAAGACGAGGAAGTTTGAGAAGACAATCAGGTATGCCTCAAGGAAGGCCTATGCAGAGACCAGACCCC GGATAAAAGGCCGATTTGCAAAGAGAAAAGATGTAGAAGTCGAAGATGACCAAATGTTCTCCTCCACACTAATGGCAGAAACAGGATATGGCATTGTCCC ATCATTCTGA
AA sequence Show only first row Show all	>Potri.004G108320.1 pacid=42796642 polypeptide=Potri.004G108320.1.p locus=Potri.004G108320 ID=Potri.004G108320.1.v4.1 annot-version=v4.1 MLKQESSGGGGGDNRARVCDTCRAAPCTVYCRADSAYLCAGCDARVHAANRVASRHERVSVCEACERAPAALLCKADAASLCTACDADIHSANPLARRHQ RVPILPISGCLHGSPVGPAAGETEDRFTTQEGEETISEEEEDEAASWLLLNPVKNSKNQNNNGFLFGGEVDEYLDLVEYNSCTENQCSDQYNQQHYCVPP KSYGGDRAVPIQYGEGKDHQQQRQYHNFQLGLEYEPSKAACSYNGSISQSVSMSSMDVGVVPESTMSEISISQHRPPKGTMELFSSTAIQMPSQLSPMDR EARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRKDVEVEDDQMFSSTLMAETGYGIVPSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02380	CO	ATCOL2, COL2	CONSTANS-like 2 (.1)		Potri.004G108320 [exp]	0	1
AT3G02380	CO	ATCOL2, COL2	CONSTANS-like 2 (.1)		Potri.017G107500 [exp]	1.41	0.9465
AT1G73670		ATMPK15	MAP kinase 15 (.1)		Potri.010G112200 [exp]	18.76	0.8455
					Potri.010G144600 [exp]	20.39	0.8516
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Potri.001G124200 [exp]	22.36	0.8559
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Potri.006G133000 [exp]	24.00	0.8754
					Potri.018G105200 [exp]	27.34	0.8128
					Potri.008G204301 [exp]	27.78	0.7791
AT2G42280	bHLH	bHLH130	basic helix-loop-helix (bHLH) ...		Potri.003G207200 [exp]	28.19	0.7860
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Potri.009G053800 [exp]	28.84	0.8655
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Potri.004G121800 [exp]	33.49	0.8132

Compare expression of checked genes

Potri.004G108320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.