Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24762 62 / 2e-13 ATGDU4 glutamine dumper 4 (.1) AT4G31730 62 / 2e-13 ATGDU1, GDU1 glutamine dumper 1 (.1) AT4G25760 60 / 1e-12 ATGDU2 glutamine dumper 2 (.1) AT5G57685 60 / 2e-12 LSB1, ATGDU3 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) AT5G38770 51 / 2e-09 ATGDU7 glutamine dumper 7 (.1) AT5G24920 50 / 7e-09 ATGDU5 glutamine dumper 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G107200 [exp] 155 / 1e-50 AT5G57685 63 / 9e-14 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Potri.017G107300 [exp] 142 / 2e-45 AT4G25760 75 / 1e-18 glutamine dumper 2 (.1) Potri.017G107400 [exp] 113 / 7e-34 AT4G31730 76 / 1e-18 glutamine dumper 1 (.1) Potri.004G108560 [exp] 95 / 1e-26 AT4G25760 57 / 2e-11 glutamine dumper 2 (.1) Potri.004G108440 [exp] 94 / 3e-26 AT5G38770 46 / 1e-07 glutamine dumper 7 (.1) Potri.018G013600 [exp] 66 / 2e-14 AT4G25760 79 / 2e-19 glutamine dumper 2 (.1) Potri.004G108800 [exp] 63 / 4e-14 AT5G24920 57 / 2e-11 glutamine dumper 5 (.1) Potri.017G107100 [exp] 62 / 5e-14 AT5G24920 48 / 2e-08 glutamine dumper 5 (.1) Potri.006G173901 [exp] 62 / 3e-13 AT5G57685 89 / 8e-23 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019985 [exp] 68 / 3e-15 AT5G57685 123 / 3e-36 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10019986 [exp] 68 / 3e-15 AT5G57685 125 / 7e-37 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10015513 [exp] 66 / 1e-14 AT5G57685 124 / 2e-36 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10006986 [exp] 66 / 2e-14 AT5G57685 124 / 2e-36 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10008910 [exp] 66 / 2e-14 AT5G57685 125 / 6e-37 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10026911 [exp] 64 / 1e-13 AT4G31730 125 / 6e-37 glutamine dumper 1 (.1) Lus10020107 [exp] 63 / 2e-13 AT4G31730 122 / 1e-35 glutamine dumper 1 (.1) Lus10006987 [exp] 61 / 6e-13 AT5G57685 125 / 2e-37 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1) Lus10008909 [exp] 46 / 1e-07 AT5G57685 87 / 2e-23 LESS SUSCEPTIBLE TO BSCTV 1, ARABIDOPSIS THALIANA GLUTAMINE DUMPER 3, glutamine dumper 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G108680.1 pacid=42795070 polypeptide=Potri.004G108680.1.p locus=Potri.004G108680 ID=Potri.004G108680.1.v4.1 annot-version=v4.1 ATGAGACCTTCTACCAACTCAACAGCTGTAGGTTCTGCTCATGGGGGATTCTGGCATTGGAATTCCCCTGTAGCTTACGTCTTCGTTGGTCTAGCATTCA TGTTGGGTCTTATCACAGTATCATTAATAATTCTTGCTTGCTCCTCTGGAAAATCTTTGTCCAACTCATCAACAAGCGAGGCTGAAGATGAAAAATCAGC AAAACAAGTGGAAATACAGGTGGAATTTGAGCCAAATATTGTTGTGATCATGGCTGGGGATGATAATCCCACATACTTGGCCAAGCCTGTCTCTTGCAAT TGTCCCAGTGAACAAGTTTAA
AA sequence Show only first row Show all	>Potri.004G108680.1 pacid=42795070 polypeptide=Potri.004G108680.1.p locus=Potri.004G108680 ID=Potri.004G108680.1.v4.1 annot-version=v4.1 MRPSTNSTAVGSAHGGFWHWNSPVAYVFVGLAFMLGLITVSLIILACSSGKSLSNSSTSEAEDEKSAKQVEIQVEFEPNIVVIMAGDDNPTYLAKPVSCN CPSEQV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24762		ATGDU4	glutamine dumper 4 (.1)		Potri.004G108680 [exp]	0	1
AT4G17900			PLATZ transcription factor fam...		Potri.013G078500 [exp]	4.24	0.8068
					Potri.005G123850 [exp]	11.04	0.7584
AT4G25000		AMY1, AMY3, ATA...	alpha-amylase-like (.1)		Potri.002G126300 [exp]	15.16	0.8089
AT4G16480		ATINT4	inositol transporter 4 (.1)		Potri.006G015200 [exp]	29.69	0.7812
AT2G28710	C2H2ZnF		C2H2-type zinc finger family p...		Potri.010G209400 [exp]	31.81	0.7530
AT4G19860			alpha/beta-Hydrolases superfam...		Potri.015G121000 [exp]	33.46	0.7702
AT2G30080		ATZIP6, ZIP6	ZIP metal ion transporter fami...		Potri.001G279300 [exp]	47.60	0.7775	ZIP6.3
AT2G31130			unknown protein		Potri.019G089900 [exp]	58.20	0.7513
AT4G21865			unknown protein		Potri.010G065666 [exp]	107.56	0.7502
AT3G01170			Ribosomal protein L34e superfa...		Potri.017G084500 [exp]	177.48	0.7461

Compare expression of checked genes

Potri.004G108680 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.