Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02360 868 / 0 6-phosphogluconate dehydrogenase family protein (.1.2) AT5G41670 724 / 0 6-phosphogluconate dehydrogenase family protein (.1.2) AT1G64190 722 / 0 6-phosphogluconate dehydrogenase family protein (.1) AT4G29120 52 / 6e-07 6-phosphogluconate dehydrogenase family protein (.1) AT3G25530 49 / 4e-06 GR1, GLYR1, GHBDH, ATGHBDH glyoxylate reductase 1 (.1.2) AT1G17650 44 / 0.0003 GR2, GLYR2 glyoxylate reductase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G108920 [exp] 933 / 0 AT3G02360 884 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.017G106900 [exp] 922 / 0 AT3G02360 918 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.008G113700 [exp] 857 / 0 AT3G02360 874 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.001G095800 [exp] 714 / 0 AT5G41670 897 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.003G135600 [exp] 712 / 0 AT5G41670 889 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.014G197900 [exp] 50 / 2e-06 AT3G25530 463 / 1e-166 glyoxylate reductase 1 (.1.2) Potri.018G088000 [exp] 45 / 0.0001 AT4G29120 463 / 8e-165 6-phosphogluconate dehydrogenase family protein (.1) Potri.001G211500 [exp] 43 / 0.0003 AT1G71180 310 / 2e-105 6-phosphogluconate dehydrogenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034102 [exp] 864 / 0 AT3G02360 897 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Lus10003043 [exp] 864 / 0 AT3G02360 897 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Lus10024725 [exp] 730 / 0 AT5G41670 896 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Lus10032341 [exp] 729 / 0 AT5G41670 893 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Lus10029098 [exp] 67 / 3e-13 AT3G02360 85 / 2e-20 6-phosphogluconate dehydrogenase family protein (.1.2) Lus10012301 [exp] 50 / 2e-06 AT3G25530 434 / 3e-155 glyoxylate reductase 1 (.1.2) Lus10001349 [exp] 49 / 6e-06 AT1G71180 335 / 4e-115 6-phosphogluconate dehydrogenase family protein (.1) Lus10034974 [exp] 44 / 8e-05 AT4G29120 201 / 1e-64 6-phosphogluconate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0106 [poplar] [flax] 6PGD_C PF00393 [poplar] [flax] 6PGD 6-phosphogluconate dehydrogenase, C-terminal domain CL0063 [poplar] [flax] NADP_Rossmann PF03446 [poplar] [flax] NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.004G108880.1 pacid=42796129 polypeptide=Potri.004G108880.1.p locus=Potri.004G108880 ID=Potri.004G108880.1.v4.1 annot-version=v4.1 ATGAAAAGCTCCATCATCAAGTCTTACGTTTCTGAGTATCACTTCTACGCGATCTTTAATTTTTCAGAACCCATTTCCAAGATAATTTTGGACAGGGTAA CGATGGCCGCACCCCCAAAACCAACAAGAATAGGCCTCGCTGGTCTGGCTGTCATGGGCCAGAACCTGGCCCTTAATATTGCGGAGAAAGGCTTCCCCGT TTCTGTTTATAATCGGTCCACCTCAAAAGTTGATGAGACTGTTGAGAGGGCTAAAAAAGAGGGAGATCTTCCCTTATATGGCTTCCATGATCCTGAATCT TTTGTGAAGTCAATCCAAAAGCCTCGAGTGATAATTATGCTTGTCAAGGCAGGGTCACCTGTTGATCAAACCATAAAGACTCTTTCTGCCTACTTGGAGA AGGGAGATTGTATCATTGATGGTGGAAATGAGTGGTATGAGAACACTGAGAGGAGAGAAAAGGCTATGGCTGAATTGGGCTTGCTCTACCTTGGAATGGG AGTTTCAGGTGGTGAAGAGGGTGCACGTAATGGAATTTCATTGACGCCTGGAGGTTCCTTCGAGGCTTTCAAGTCCATCGAAGACATTCTTCTTAAAGTG GCAGCCCAAGTTCCTGATAGTGGCCCTTGCGTGACTTACATCGGCAAAGGCGGTTCTGGTAATTTTGTCAAGATGGTTCATAATGGAATTGAATACGGCG ATATGCAGTTGATTGCTGAAGCTTATGATGTACTAAAATCAGTTGGAAAGTTGTCAAATGAAGAACTCCGTAGTGTTTTTGCAGAATGGAACAAGGGTGA GCTTCTTAGCTTCTTGATTGAAATCACCGCAGATATATTTGGAATTAAAGATGATAAGGGGGAAGGATATCTGGTTGACAAGGTTTTGGACAAAACCGGC ATGAAGGGTACAGGTAAATGGACTGTGCAGCAAGCTGCTGATCTATCAGTAGCAGCTCCTACAATTGCATCTTCATTGGATGCAAGGTTCCTCAGTGGTT TGAAGGAGGAACGCGTTGAGGCTGCTAAAGTCTTCAAAGCAGGTGGTTTTTGGGATATTTTAACTGGTCAAGTGGTGGATAAGAAGCAGTTGATTGATGA TGTCAGACAAGCTCTTTATGCATCCAAGATTTGTAGTTATGCACAGGGGATGAATCTGATCCGTGCAAAGAGTATTCAGAAGGGATGGGACTTAAAATTG AGAGAACTAGCTAGGATTTGGAAGGGTGGTTGTATTATCCAATCTGTATTTCTGGGCAGAATCAAGAAGGCATACGATAGGAATCCTGATCTTGCTAGCC TTCTAGTGGATCCAGAGTTTGCAAAGGAAATTATTGAGCGCCAGTCTGCGTGGCGCAGGGTTGTGTGTCTTGCAATCAGCTCCGGTATTAGCACTCCTGG TATGTCATCCAGCCTCGCTTATTTTGACACCTACCGGAGGGGAAGGTTGCCTGCTAATTTGGTCCAAGCTCAAAGAGATTATTTTGGTGCTCATACATAT GAAAGGGTTGATGTGGAAGGATCTTTCCATACTGAATGGTTCAAGATTGCTAGGCAGTGTAAGAATTAA
AA sequence Show only first row Show all	>Potri.004G108880.1 pacid=42796129 polypeptide=Potri.004G108880.1.p locus=Potri.004G108880 ID=Potri.004G108880.1.v4.1 annot-version=v4.1 MKSSIIKSYVSEYHFYAIFNFSEPISKIILDRVTMAAPPKPTRIGLAGLAVMGQNLALNIAEKGFPVSVYNRSTSKVDETVERAKKEGDLPLYGFHDPES FVKSIQKPRVIIMLVKAGSPVDQTIKTLSAYLEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARNGISLTPGGSFEAFKSIEDILLKV AAQVPDSGPCVTYIGKGGSGNFVKMVHNGIEYGDMQLIAEAYDVLKSVGKLSNEELRSVFAEWNKGELLSFLIEITADIFGIKDDKGEGYLVDKVLDKTG MKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKAGGFWDILTGQVVDKKQLIDDVRQALYASKICSYAQGMNLIRAKSIQKGWDLKL RELARIWKGGCIIQSVFLGRIKKAYDRNPDLASLLVDPEFAKEIIERQSAWRRVVCLAISSGISTPGMSSSLAYFDTYRRGRLPANLVQAQRDYFGAHTY ERVDVEGSFHTEWFKIARQCKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02360			6-phosphogluconate dehydrogena...		Potri.004G108880 [exp]	0	1
AT5G16590		LRR1	Leucine rich repeat protein 1,...		Potri.017G130600 [exp]	3.87	0.9086
AT5G63400		ADK1	adenylate kinase 1 (.1.2)		Potri.012G095300 [exp]	9.89	0.9066
AT1G50940		ETFALPHA	electron transfer flavoprotein...		Potri.011G135600 [exp]	11.74	0.8309
AT1G21370			unknown protein		Potri.002G071300 [exp]	14.42	0.8709
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Potri.001G080400 [exp]	15.49	0.8949
AT5G16590		LRR1	Leucine rich repeat protein 1,...		Potri.004G086100 [exp]	16.97	0.8905
AT3G50760		GATL2	galacturonosyltransferase-like...		Potri.007G031700 [exp]	20.49	0.8807
AT5G63400		ADK1	adenylate kinase 1 (.1.2)		Potri.015G092800 [exp]	21.35	0.8615
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Potri.010G207200 [exp]	23.04	0.9051	UXS1.1
AT2G26600			Glycosyl hydrolase superfamily...		Potri.018G129500 [exp]	23.36	0.8179

Compare expression of checked genes

Potri.004G108880 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.