Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05800 40 / 0.0007 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G206500 [exp] 324 / 6e-113 AT4G02550 88 / 4e-20 unknown protein Potri.015G008050 [exp] 323 / 7e-113 AT4G02550 77 / 2e-16 unknown protein Potri.009G022650 [exp] 323 / 1e-112 AT4G02550 79 / 7e-17 unknown protein Potri.001G157750 [exp] 322 / 2e-112 AT4G02550 73 / 6e-15 unknown protein Potri.011G163248 [exp] 322 / 8e-112 AT4G02550 93 / 4e-22 unknown protein Potri.006G202550 [exp] 317 / 3e-110 AT4G02550 76 / 6e-16 unknown protein Potri.006G196716 [exp] 313 / 9e-109 AT4G02550 69 / 2e-13 unknown protein Potri.001G014200 [exp] 310 / 3e-107 AT4G02550 81 / 6e-18 unknown protein Potri.011G088750 [exp] 308 / 6e-107 AT4G02550 79 / 3e-17 unknown protein
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF12776 [poplar] [flax] Myb_DNA-bind_3 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.004G108960.1 pacid=42795914 polypeptide=Potri.004G108960.1.p locus=Potri.004G108960 ID=Potri.004G108960.1.v4.1 annot-version=v4.1 ATGTCTCACATGCTACTTGAGATATTAGCTGAGGAGACACTTAAAGGAAACAAACCTTCTTCCACCTTTAAAGCAGAATCTTTTGTTAAGGTGGCTACAA AAATTAGTCAAAAGTTCAACGTGCAATGCGAGCCTAAGTATGTGGGCAATCATCTCAAAACTGTGAAAAAAGAATGGGGAATAATAACCAAACTTAAAAA TAAAATTGGGATGATTGCAATGACAATTATTGTTGGAAAAGACATGGCAACCAGAAATTATGCCAAATCATATGCTGATGTCAACTTGGAAGAGAACGCT GAAGAGCAATCAATTTCAATTGAAAATGAAGGGGAATATGAAGAAACTTCAAAAGAAAAAGAGACATCTTCCTCTAGTGCACACAAGCAAGGTTGTCAAT TCCGTTTCGATGATGGTGTTGAAAAGTTGTCTAAAAAGATTGCAGATGTAGTATTTGCAATTCAAAACCTTAGCAAAAATCAACTTGATGTTAATGAGCT ATATACAAAAGTGATGAAAATTGAAGGCTTTGATGAGATCACTCTTGGGGATGCATTTGATCACTTGGTCCAACATGAAATGTTGGCAAAAGCATTTATG ACAAAAAATGCTAATTTTAGGAAAATTTGGGTTCAAAATTTTGTGAACCAACACTACTACAGGCCTGATTGCTAA
AA sequence Show only first row Show all	>Potri.004G108960.1 pacid=42795914 polypeptide=Potri.004G108960.1.p locus=Potri.004G108960 ID=Potri.004G108960.1.v4.1 annot-version=v4.1 MSHMLLEILAEETLKGNKPSSTFKAESFVKVATKISQKFNVQCEPKYVGNHLKTVKKEWGIITKLKNKIGMIAMTIIVGKDMATRNYAKSYADVNLEENA EEQSISIENEGEYEETSKEKETSSSSAHKQGCQFRFDDGVEKLSKKIADVVFAIQNLSKNQLDVNELYTKVMKIEGFDEITLGDAFDHLVQHEMLAKAFM TKNANFRKIWVQNFVNQHYYRPDC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.004G108960 [exp]	0	1
AT5G46940			Plant invertase/pectin methyle...		Potri.005G023201 [exp]	14.49	0.8469
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Potri.001G080000 [exp]	16.49	0.8529
AT3G54490		RPB5E	"RNA polymerase II fifth large...		Potri.003G200450 [exp]	16.79	0.8487
AT1G28580			GDSL-like Lipase/Acylhydrolase...		Potri.011G064100 [exp]	18.76	0.8059
					Potri.003G104800 [exp]	25.21	0.8533
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Potri.010G043300 [exp]	25.45	0.8424
AT4G02550			unknown protein		Potri.007G059900 [exp]	25.49	0.8283
AT5G46940			Plant invertase/pectin methyle...		Potri.005G023050 [exp]	28.63	0.8208
AT5G17620			unknown protein		Potri.013G072300 [exp]	29.66	0.8497
AT5G46940			Plant invertase/pectin methyle...		Potri.005G023100 [exp]	31.12	0.8222

Compare expression of checked genes

Potri.004G108960 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.