Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08025 59 / 3e-12 Protein of unknown function (DUF784) (.1) AT1G57775 59 / 5e-12 Protein of unknown function (DUF784) (.1) AT1G45221 58 / 8e-12 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT1G57777 58 / 1e-11 Protein of unknown function (DUF784) (.1) AT1G45215 57 / 1e-11 Protein of unknown function (DUF784) (.1) AT4G07515 56 / 5e-11 Protein of unknown function (DUF784) (.1) AT5G34905 55 / 1e-10 Protein of unknown function (DUF784) (.1) AT3G44115 55 / 1e-10 Protein of unknown function (DUF784) (.1) AT1G45223 55 / 1e-10 Protein of unknown function (DUF784) (.1) AT5G42955 55 / 1e-10 Protein of unknown function (DUF784) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G109232 [exp] 208 / 5e-71 AT5G34885 55 / 1e-10 Protein of unknown function (DUF784) (.1) Potri.004G109500 [exp] 204 / 1e-69 AT1G57775 56 / 6e-11 Protein of unknown function (DUF784) (.1) Potri.004G110661 [exp] 204 / 1e-69 AT1G57775 57 / 2e-11 Protein of unknown function (DUF784) (.1) Potri.004G109600 [exp] 204 / 1e-69 AT1G57775 56 / 6e-11 Protein of unknown function (DUF784) (.1) Potri.004G110651 [exp] 204 / 1e-69 AT1G57775 57 / 2e-11 Protein of unknown function (DUF784) (.1) Potri.004G109666 [exp] 204 / 1e-69 AT1G57775 56 / 6e-11 Protein of unknown function (DUF784) (.1) Potri.004G110671 [exp] 204 / 1e-69 AT1G57775 57 / 2e-11 Protein of unknown function (DUF784) (.1) Potri.004G109633 [exp] 204 / 1e-69 AT1G57775 56 / 6e-11 Protein of unknown function (DUF784) (.1) Potri.004G109000 [exp] 203 / 7e-69 AT5G34885 63 / 8e-14 Protein of unknown function (DUF784) (.1)
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0482 [poplar] [flax] Prolamin PF05617 [poplar] [flax] Prolamin_like Prolamin-like
Representative CDS sequence Show only first row Show all	>Potri.004G110300.1 pacid=42795235 polypeptide=Potri.004G110300.1.p locus=Potri.004G110300 ID=Potri.004G110300.1.v4.1 annot-version=v4.1 ATGGGAAGTTTTGGCAAAAGCATCTCCTCAGCACTATTTTTCTATATCGGTATACTTATCATTACACCGGGGTTTGCAATTCGTACTTATGAAGAAAATC CAGAGCTTTCTCAACATTTGGAACCATGCCATGCAAAGGTGACAAAACGTTGTGCAATCGAAATCTCTAATAGTATATACAACAACAATACTCCATTAGA ATATTGTTGCCAAAAGCATATAACAACCGGGAAAGCTTGCCATGATGATTTCATAAAACTATTCATGTCAAGATTGCCTAAGGAAAAAGTAACTTTTGTT GTAGCTAAGGGTGACCAAATTTGGAACCATTATGCTGCTATTGCAGCTTTGGCATCTATTGCATCAACTCTTTCTATTCTACCTTAA
AA sequence Show only first row Show all	>Potri.004G110300.1 pacid=42795235 polypeptide=Potri.004G110300.1.p locus=Potri.004G110300 ID=Potri.004G110300.1.v4.1 annot-version=v4.1 MGSFGKSISSALFFYIGILIITPGFAIRTYEENPELSQHLEPCHAKVTKRCAIEISNSIYNNNTPLEYCCQKHITTGKACHDDFIKLFMSRLPKEKVTFV VAKGDQIWNHYAAIAALASIASTLSILP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08025			Protein of unknown function (D...		Potri.004G110300 [exp]	0	1
AT5G21050			unknown protein		Potri.004G195900 [exp]	1.00	1.0000
					Potri.014G065250 [exp]	1.41	1.0000
					Potri.004G208200 [exp]	4.00	0.6534
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Potri.010G182900 [exp]	5.65	0.5722
AT1G29510		SAUR68	SMALL AUXIN UPREGULATED 68, SA...		Potri.005G196850 [exp]	13.41	0.6070
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Potri.006G196500 [exp]	17.54	0.5337	MS2.1
					Potri.017G041400 [exp]	32.48	0.6114
AT1G74500	bHLH	TMO7, PRE3, ATB...	TARGET OF MONOPTEROS 7, activa...		Potri.012G069500 [exp]	40.65	0.4674
AT5G59530			2-oxoglutarate (2OG) and Fe(II...		Potri.005G222401 [exp]	89.95	0.3566
AT1G43760			DNAse I-like superfamily prote...		Potri.012G064001 [exp]	96.07	0.3546

Compare expression of checked genes

Potri.004G110300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.